RNA id: XM_022669557.1


Basic Information

Item Value
RNA id XM_022669557.1
length 2795
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC103043643
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9129858 ~ 9187127 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTATGAACGAGCTGATTGAGAGTGAGAGATATTATGTGGAAGAGCTGCAGAGCATAATGGAGgGTTATGTTGCCGCGCTGGATAACTCAGAAATGACTCATTTGATCCCGGCGGTTCTGGAAAACAAGAAGGATGTGCTCTTTGGCAACCTGGGAGAAATCTGGGACTTTCACAACAAGACTTTTCTGAAAGAGCTCGAGAACTATGTGGAGAAGCCTGAGTTAGTGGGAACATGCTTCTTGAAAAGAAAAGAAGAGCTGCAGATCTATGAGAAATACTGTCAAAATAAACCCCGGTCTGAAGCTCTCTGGAGACAGTGTGGAGACAGCATGTTCTTTCAGGAGTGCCAGAAACGGTTGGACCATAAGCTTTCGTTAGATGCGTACCTGCTGAAGCCCGTGCAGAGAATCACCAAGTACCAGCTGATGCTTAAGGAGATGCTGAAGTGCAGTAAGAACTCTGAAGGCACGGCGGAGCTGGAGGAAGCTTTAGCCACTATGCTGGACATCATAAAGTCAGTGAACGACTCAATGCACCAGATCGCCATCACTGGCTTTGAgGGTAACCTGAACGACCTGGGAAAGCTGCTCATGCAGGGCTCCTTCAACGTCTGGACCGACCATAAGAAAGGCCACAACAAGGTGAAGGACCTGGCCCGATTCAAACCCATGCAGAGACATCTGTTCCTGTACAATACAGTGATTTTATTCTGTAAGAAGCGTGAGGAGATCTCAGAAGGCCACGAGAAATCACCCTCATACAGTTTCAAGCATTCCCTCAAGATGAGTGCGGTTGGAATCACAGAGAATGTAAAAGGAGACGTCAAAAAGTTTGAAATCTGGTTCAATGGGAGAGAGGAAGTTTACATCATTcagGCTTCCTCCATGGACGTGAAGAACATGTGGGTGTCTGAGATTCGGAAAGTGCTGACAGGACAGCTGGAGGCGTGTAGAGAGGCAAGCCAGCTCCATCAAAGGATCACGGAGAACATCTACCATGCTCCCATGagGAATTTTCGAAAAGTGGCCCTCAGGCAGTCGGACTCCTCCAGCCCCGAGACAGGCTACAGGCGCAGCGACGGCCCCAACATGAGGCATAAACGAGCTGATGCTTCCGGCAGCCTTAGCTCAGACCAATCCTCAGCTCTGGCTAGAAAGCGTTTCACCTTACAAGGCCTGTCCAATCGCAGGTCTCTGCCTTCAGAACCAGCACCTAAGGAGACAGACGTCCCCCGCCGCTTCTCTTTAGCCTCCACCCTCAGTGCCTCCTCCACCACACGCACTAAAGgatGGACTCAACGTCGTTTACCCTCGATGGACACTGAAGACTTCGAAACCATCCCATCCAGCGCTGAGGAGCTATCGAATTCTTCAGACGGAGAAGAGGACAGCAATAACAAAAATGGGGAGCTTGAACGCTTTCAGGTGCAGCTGACGTATGAGGCGCGCGCTCCACACGAGCTCTCGCTGGAGGCAGGAGATGTAGTTCAGTTCGTACAGGAGGCTGAGAATGGCCACTGGCTAGTCAAGAACCTAAATACTCTGAAGACAGGGCTGGTCCCACCCACGATCCTGCAGTCTACAGCAGGAAGTGTGGACATTTACAGTCACTCTGACATCTTCAGTGACCTGTGCACCGCGGCTCTCACGGACACCGAGGAGACAGAGGAGAGCGCCGGGCCGCTGCTGGCCCAGCAGAGCCGGCTTGCATGTTGAACATGTGCATTGTGtgtcctccttcttcttcttcttcttctccttcatcttctcctttttttttttacccgcTCGTTGTTCTTGTTGCTGTCTTGCTCGAGTGCCATACAGCGGTGAAGCGTGCAGGACGCTGCAGCTCCTGCAGAGTCCTGTAGAGCACTAGAACGAGCCCCGCCATTCTGGAAGAGTGGGGAACAAcctctactgctgctgctattcCCAGCCACACTGCACTGGAACGCGTGCCATCATTTTTGGCCTTTGGATTCTAGAGCTGAGACTCTGCTCCATCATTTTCGGACGGCGTGCATTGGATGACACGGACGCTAGCCGCCCATCATCATCCACCATCATTAGGCCATCTGCTATCTGCTGTGCCTTAGCAGAgcgaaaaaaaaagttcaatttttgacatcttgaatttttttttcttaaacaaaaaataaataaggacTGTGGACGAAGAAAGGAGATGCAGTATAAAGCCATGCAGTATGACTCCAAGGACGTAATGCCATGATTCTGAGGtaaaaagtgagagaaacagacttaaaaaataaaaaaagacaaaagcaaAAAGACTCTACTGTACTGTCCTGCTGAATTTTCTCTACATGATCACAAAAGACACTGAAACGGAAAACGAACCATCCGAAGAGCATTGAAGAACTCTTTTAAATGGTCAAAAATGCAGCACTTTcgaaaaactaaaataacaatctatcatgtgtatgtgtattatatAAGATTTATATACTCCTTTTTTTACATGTTGACTTATTTGTTTtgcatattctgtttttttttctgattttaaagCTTCATACTACTTATAAACCTCCTCAACAGATCTCCCTCAGATCGGATCTCAGTCCAGGTTCAGCTTCTAAGCGTTATTTCACCTTTtcgtattttattattgtagcaCAACTATTCCAACTGTACTGTACAGACAGGTAATGTAAGGTAATGTATGATTGGGCTttggaaatatattttttttattttcatggaATCAAATGCAAAAGCAGTGGATAAATCAGTgagaataagtaaataagtgtactgtattaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55334 lncRNA upstream 141755 8954803 ~ 8988103 (+) True G41097
TU55337 lncRNA upstream 187787 8937418 ~ 8942071 (+) True G41099
TU55330 lncRNA upstream 194372 8928462 ~ 8935486 (+) False LOC103022991
TU55319 lncRNA upstream 324655 8804984 ~ 8805203 (+) True G41087
XR_002649928.1 lncRNA upstream 358597 8770054 ~ 8771261 (+) True LOC111192503
TU55394 lncRNA downstream 19194 9206321 ~ 9232010 (+) True G41136
TU55396 lncRNA downstream 64390 9251517 ~ 9280561 (+) True G41137
TU55398 lncRNA downstream 64390 9251517 ~ 9252058 (+) False G41137
TU55511 lncRNA downstream 115498 9302625 ~ 9302915 (+) True G41235
TU55516 lncRNA downstream 150721 9337848 ~ 9338218 (+) True G41240
XM_022669560.1 mRNA upstream 25013 8998150 ~ 9104845 (+) True mcf2l2
XM_022669561.1 mRNA upstream 25013 8998151 ~ 9104845 (+) False mcf2l2
XM_022669562.1 mRNA upstream 25013 9032105 ~ 9104845 (+) False mcf2l2
XM_022669563.1 mRNA upstream 25014 9015200 ~ 9104844 (+) False mcf2l2
XM_022669552.1 mRNA upstream 143272 8942842 ~ 8986586 (+) False LOC103025921
XM_022669564.1 mRNA downstream 7058 9194185 ~ 9254981 (+) False ect2
XM_022669565.1 mRNA downstream 7058 9194185 ~ 9254975 (+) False ect2
XM_022669567.1 mRNA downstream 7059 9194186 ~ 9255897 (+) True ect2
XM_022669569.1 mRNA downstream 7059 9194186 ~ 9254981 (+) False ect2
XM_022669566.1 mRNA downstream 7059 9194186 ~ 9254981 (+) False ect2
XR_001518717.2 other upstream 1302944 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 2596184 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3819051 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4994273 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 6391641 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 808626 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 1105210 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 1568082 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 2384099 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 2567216 11754343 ~ 11757209 (+) False tmem221

Expression Profile