RNA id: XM_022669561.1


Basic Information

Item Value
RNA id XM_022669561.1
length 2185
RNA type mRNA
GC content 0.51
exon number 13
gene id mcf2l2
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8998150 ~ 9104845 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTGGGAAAGCAGAGCACAGCAGTGTGTTCAGGATCAGGAGCTGCTCAAACTCCTCTTTTCTCCATATCCTTTCCTGTGCTCAGAATGAATGATTAACATTAGGACCTACACACTGAGAACCGCATCACTCCGGATCCagctcagcctcagcctcagcctcagcctctcctcctcctcctcatccatccatccatacatacactgctgctgctgctgctgctgatcacCGGCGGGGAGTGGCCGCTGCTTTGTGTGAGCGGGGGGAGCCCTGTGTGCtgcaggaggagaggaggaggagagggggagaggagaggaggatagaggaggagaggctGCCCCTGAGATGCTCTGCTGGCTGGAAGAGGAAGAGATGTCTGTGCAGGAGTTCCTGGAAAGGGTGGGCTCTGTGATCACCCATGTCGATGAGATTATGCAGCAGGAGATACGGCCGCTGCTGGCTGTGGATATCATCGAGCAGCTTCACAGGCAGTTCGCTCTGCTCTCAGgaggaagaggaaaggATGGCGCCCCCATCATCACCTTCCCCGAGTACTCTGACTTCAGTGAGCTTCCTGAGGAGGATTTTATTAATGTAGTTACATATCTCACCAGCATACCCAGTCTGGACGCGGCCAGTATCGGCTTCATAATTATCATAGACCGCAGGCGGGACAAATGGAGTTCGGTGAAAGCCTCGTTGGCTCGAATAGCAGGGGCGTTCCCTGGCAACCTGCAGCTGGTCCTGGTGCTGAGGCCCTCGCGTTTCTTCCAAAGAGCTATAGCTGACATCGGCATCCGATTACACCGCGATGACTTTAAAATGAAGATCGTCatgctgaactctctctcaGATCTGCACGGCTACATCGACAAGGCTCAGCTGACCTGTGAGCTGGGGGGCAGTCTGCAGTACTGTCACAGTCAGTGGATTCACCATCGCACAGCTATTGAAAACTTTGCGGTGACGGTGAAAAGCACAGCGCAGATGCTGCAGAAGTTTGGAACAGATTTGGCAGAAACTGAACTCCCCAATGATGTGCAGTGCACCAAAGATCTGCTGACGTCTCACACAGAGAAACACGATAAACTCAAGGATGAACTAAAGTTAGCATTGAAACAAGGAAGCACTCTGTTGTCTTGCATCAAAGACCTGGCCAATAAAACCGAAAACCACAAGCTGAACCCAGATGAAACGGAAAATCAGACCACTGTTGAAAGGTTGCTGGCTCAGTTGGATGAGACTGAAAATGCTTTTGAACAGTTCTGGTCCAAACATCATCTAAAGTTAGAGCAGTGTTTGCAGCTCAGGCACTTCGAGCAGGACTTTAGAGAGgtaaaAGTGTCGTTGGACAGTCTGATGGAGGATTTGCTGAAGCTCACAGACATCGGGGACTGTGTTAGTCGTGTGGTTCAGCTGCTGAAAGAACTGAAGAGTCTAGAGGACAGTGCTCAGGAGTCTTTGGAGAAGGCGCAGCTGCATGCCCTGCATGGAGACCAGCTCATCCAGAGCAACCACTACGCTGTGGATTCCATCCGGCCCAAATGCGTGGAGCTGCGACGCATCTGTGACGACTTCAGCAACGAGTCCAAGAAGAAATACGACATCCTGTCCAAATCACTGGAGATCCATACAGGCATGGACAAGgTTAACCACTGGTGTGAGAGTGGAGTGTATCTAATGGCGTCTCAGGCTGTGGATAAGTGCCAGTCTCAGGAGGGTGCGGAGGCGGCACTGCAGGACATCCAGAAGTACATGGATTCAGCCAGGGAGCAGCAGCTCAGTCAGCTAAAAGACCTGTACAACCAGCACGAGATCATCCTGTCTGATCACATAAAGATTAACGTGCAGAGCGCTTTAAAGAGGCTGGATGAAGTTCAAGAGATGTTTGAGAAGAGGCACATCAGCCTAAAGAGGCTTTCAGCTAAGCAGAGCAGACCTGTGCAGCCTGTGGCTCCACGACCTGAATCTTCACCCAAGCGTCCTTCACCCAAAACCCCACGACCTTCCGGCCCAGGTTAGTAAACGGAGCAGCTTTCACTGGAAACAGAATCTGTTTCACAGTGTCTGACCACAAACTGAAACACATGTAACATCTATCTGCTTAGTGCAGTTACAACAACAGACATCTATTCAACTTTTACTACTGCtaccttttcattttttttttgttaaaatggatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55334 lncRNA upstream 10048 8954803 ~ 8988103 (+) True G41097
TU55337 lncRNA upstream 56080 8937418 ~ 8942071 (+) True G41099
TU55330 lncRNA upstream 62665 8928462 ~ 8935486 (+) False LOC103022991
TU55319 lncRNA upstream 192948 8804984 ~ 8805203 (+) True G41087
XR_002649928.1 lncRNA upstream 226890 8770054 ~ 8771261 (+) True LOC111192503
TU55382 lncRNA downstream 26264 9131109 ~ 9163752 (+) True G41127
TU55386 lncRNA downstream 60164 9165009 ~ 9168734 (+) True G41131
TU55394 lncRNA downstream 101476 9206321 ~ 9232010 (+) True G41136
TU55396 lncRNA downstream 146672 9251517 ~ 9280561 (+) True G41137
TU55398 lncRNA downstream 146672 9251517 ~ 9252058 (+) False G41137
XM_022669549.1 mRNA upstream 11565 8942842 ~ 8986586 (+) True LOC103025921
XM_022669551.1 mRNA upstream 11565 8942842 ~ 8986586 (+) False LOC103025921
XM_022669550.1 mRNA upstream 11565 8942842 ~ 8986586 (+) False LOC103025921
XM_022669552.1 mRNA upstream 11565 8942842 ~ 8986586 (+) False LOC103025921
XM_007252572.3 mRNA upstream 62748 8921928 ~ 8935403 (+) True LOC103022991
XM_022669553.1 mRNA downstream 25013 9129858 ~ 9187127 (+) True LOC103043643
XM_022669554.1 mRNA downstream 25013 9129858 ~ 9187127 (+) False LOC103043643
XM_022669555.1 mRNA downstream 25013 9129858 ~ 9187127 (+) False LOC103043643
XM_022669557.1 mRNA downstream 25013 9129858 ~ 9187127 (+) False LOC103043643
XM_022669556.1 mRNA downstream 25013 9129858 ~ 9187127 (+) False LOC103043643
XR_001518717.2 other upstream 1171237 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 2464477 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3687344 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4862566 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 6259934 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 890908 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 1187492 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 1650364 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 2466381 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 2649498 11754343 ~ 11757209 (+) False tmem221

Expression Profile