RNA id: XM_022669563.1


Basic Information

Item Value
RNA id XM_022669563.1
length 2066
RNA type mRNA
GC content 0.50
exon number 13
gene id mcf2l2
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8998150 ~ 9104845 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGTCTCTCCGTGTGAAGTTCCCTCTGACGCACTGTGGACCAGAACGCCCCTCGCAGTGATGAATGCTTTGCAGGGTGGGAGAGGAAGGGGAAGCCCCCGGAGCTTCTGGCATTGTTGAGGATATTTGTGTAAACCATGGCATTTTGTTCTGCGGCTTCTGAGAAAGCTGTAGAAAGGCCTCGTCGGAGGTGAGCTGCTGCTGGGGAGCGCTGGGGAACATCAGGAGAGGGGAACGAACCCAGGACTGCTGTTGGGACCGGTCGGCCTGGGACGTTCTCCACCATGGGGTCTATAATGTATGAGATTATGCAGCAGGAGATACGGCCGCTGCTGGCTGTGGATATCATCGAGCAGCTTCACAGGCAGTTCGCTCTGCTCTCAGgaggaagaggaaaggATGGCGCCCCCATCATCACCTTCCCCGAGTACTCTGACTTCAGTGAGCTTCCTGAGGAGGATTTTATTAATGTAGTTACATATCTCACCAGCATACCCAGTCTGGACGCGGCCAGTATCGGCTTCATAATTATCATAGACCGCAGGCGGGACAAATGGAGTTCGGTGAAAGCCTCGTTGGCTCGAATAGCAGGGGCGTTCCCTGGCAACCTGCAGCTGGTCCTGGTGCTGAGGCCCTCGCGTTTCTTCCAAAGAGCTATAGCTGACATCGGCATCCGATTACACCGCGATGACTTTAAAATGAAGGTACCGATCGTCatgctgaactctctctcaGATCTGCACGGCTACATCGACAAGGCTCAGCTGACCTGTGAGCTGGGGGGCAGTCTGCAGTACTGTCACAGTCAGTGGATTCACCATCGCACAGCTATTGAAAACTTTGCGGTGACGGTGAAAAGCACAGCGCAGATGCTGCAGAAGTTTGGAACAGATTTGGCAGAAACTGAACTCCCCAATGATGTGCAGTGCACCAAAGATCTGCTGACGTCTCACACAGAGAAACACGATAAACTCAAGGATGAACTAAAGTTAGCATTGAAACAAGGAAGCACTCTGTTGTCTTGCATCAAAGACCTGGCCAATAAAACCGAAAACCACAAGCTGAACCCAGATGAAACGGAAAATCAGACCACTGTTGAAAGGTTGCTGGCTCAGTTGGATGAGACTGAAAATGCTTTTGAACAGTTCTGGTCCAAACATCATCTAAAGTTAGAGCAGTGTTTGCAGCTCAGGCACTTCGAGCAGGACTTTAGAGAGgtaaaAGTGTCGTTGGACAGTCTGATGGAGGATTTGCTGAAGCTCACAGACATCGGGGACTGTGTTAGTCGTGTGGTTCAGCTGCTGAAAGAACTGAAGAGTCTAGAGGACAGTGCTCAGGAGTCTTTGGAGAAGGCGCAGCTGCATGCCCTGCATGGAGACCAGCTCATCCAGAGCAACCACTACGCTGTGGATTCCATCCGGCCCAAATGCGTGGAGCTGCGACGCATCTGTGACGACTTCAGCAACGAGTCCAAGAAGAAATACGACATCCTGTCCAAATCACTGGAGATCCATACAGGCATGGACAAGgTTAACCACTGGTGTGAGAGTGGAGTGTATCTAATGGCGTCTCAGGCTGTGGATAAGTGCCAGTCTCAGGAGGGTGCGGAGGCGGCACTGCAGGACATCCAGAAGTACATGGATTCAGCCAGGGAGCAGCAGCTCAGTCAGCTAAAAGACCTGTACAACCAGCACGAGATCATCCTGTCTGATCACATAAAGATTAACGTGCAGAGCGCTTTAAAGAGGCTGGATGAAGTTCAAGAGATGTTTGAGAAGAGGCACATCAGCCTAAAGAGGCTTTCAGCTAAGCAGAGCAGACCTGTGCAGCCTGTGGCTCCACGACCTGAATCTTCACCCAAGCGTCCTTCACCCAAAACCCCACGACCTTCCGGCCCAGGTTAGTAAACGGAGCAGCTTTCACTGGAAACAGAATCTGTTTCACAGTGTCTGACCACAAACTGAAACACATGTAACATCTATCTGCTTAGTGCAGTTACAACAACAGACATCTATTCAACTTTTACTACTGCtaccttttcattttttttttgttaaaatggatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55334 lncRNA upstream 27097 8954803 ~ 8988103 (+) True G41097
TU55337 lncRNA upstream 73129 8937418 ~ 8942071 (+) True G41099
TU55330 lncRNA upstream 79714 8928462 ~ 8935486 (+) False LOC103022991
TU55319 lncRNA upstream 209997 8804984 ~ 8805203 (+) True G41087
XR_002649928.1 lncRNA upstream 243939 8770054 ~ 8771261 (+) True LOC111192503
TU55382 lncRNA downstream 26265 9131109 ~ 9163752 (+) True G41127
TU55386 lncRNA downstream 60165 9165009 ~ 9168734 (+) True G41131
TU55394 lncRNA downstream 101477 9206321 ~ 9232010 (+) True G41136
TU55396 lncRNA downstream 146673 9251517 ~ 9280561 (+) True G41137
TU55398 lncRNA downstream 146673 9251517 ~ 9252058 (+) False G41137
XM_022669549.1 mRNA upstream 28614 8942842 ~ 8986586 (+) True LOC103025921
XM_022669551.1 mRNA upstream 28614 8942842 ~ 8986586 (+) False LOC103025921
XM_022669550.1 mRNA upstream 28614 8942842 ~ 8986586 (+) False LOC103025921
XM_022669552.1 mRNA upstream 28614 8942842 ~ 8986586 (+) False LOC103025921
XM_007252572.3 mRNA upstream 79797 8921928 ~ 8935403 (+) True LOC103022991
XM_022669553.1 mRNA downstream 25014 9129858 ~ 9187127 (+) True LOC103043643
XM_022669554.1 mRNA downstream 25014 9129858 ~ 9187127 (+) False LOC103043643
XM_022669555.1 mRNA downstream 25014 9129858 ~ 9187127 (+) False LOC103043643
XM_022669557.1 mRNA downstream 25014 9129858 ~ 9187127 (+) False LOC103043643
XM_022669556.1 mRNA downstream 25014 9129858 ~ 9187127 (+) False LOC103043643
XR_001518717.2 other upstream 1188286 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 2481526 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3704393 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4879615 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 6276983 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 890909 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 1187493 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 1650365 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 2466382 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 2649499 11754343 ~ 11757209 (+) False tmem221

Expression Profile