RNA id: XM_022669688.1


Basic Information

Item Value
RNA id XM_022669688.1
length 3314
RNA type mRNA
GC content 0.51
exon number 14
gene id med16
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15805602 ~ 15826504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAGACGGTTatatttagttagctagttagtctgttagcttagttagctaacaGTTAGTGTTTCTGTTTATGGTTAGGGTCGTTACACTCCTGGCCGGTAACGGCGCTCTGACAGGTCAGTGCTGGGCGGAGCGCAGCGCTGCAGAGGAAGACTCATACACACAGCAACAGCGCTGTAGTTCACTGTATAATCTCCATACACAGaaactttattttagtttaactgTGTTGTTTCAGAACCGTGTGGATTGtacatattttttctaaatacgtcgcttttttccccctcatttGTATCAAATTTGGTGAGATTTTGCGCTTTGTTATGACGAACTGGTTAGCTAAATAAGCTAACAAGCTAGcgttagctggctagctaacaagctagcattagctgctagctaACGCCGGGCAGTAGAGTCTATTGAATGGCTCTCTGTTCACTTGAGCGTTTGTATGAAACCCGGAGACATTGGAGGAGTATATCTATCTTAGTTAAATcgttaatgtattaataatggaggttgtgtatgtgtgcgagTGGGAGAAGAGACCCAAAAACAACCACTGCCCCTCCATCCCGCTGGTGTGTGCCTGGTCCTGCAGAAACCTCATCGCCTTCACAACAGACCTGAAAAATGAAGAGGACGATAAAGAACTCAGTCACATGATTCATATCATTGACACTGAACACCCCTGGGATGTCTACTCCATCAACTCGGGTCATAGGGAAGTTATTTCGTGCTTGGAGTGGGACCAGTCAGGATCCAGACTGCTCTCTGCTGATGGGGACGGAGAGATCAAGTGTTGGGCAATGAAGGAACACCTTGTGAACAGCTGGGAAAGTATACAGAGCAGCTCTGTTGATGGAGACCCTATTGTAGCTCTCTCATGGTTGCACAATGGGGTCAAACTTGCACTGCATGTGGAGAAGTCTGGATCCACCAACTTTGGTGAGAAGTTCTCCCGGGTGAAGTTCTCTCCGTCACTCACTCTGTTCGGCGGTAAGCCTATGGAGGGCTGGCTGGCTGTGACCGTGAGTGGCCTGGTGACCGTGTCCCTTCTGAAGCCCAACGGCGCTTTGCTGTCAGCCAGCGAAAGCCTGTGCCGGCTGCGTGGACGCGTGGCTCTGGCTGACATTGCCTTCACCGGCGGGGGGAACATTGTGGTGGCAGCGACGGACGGCAGCAGCTCATCACCAGTTCAGttttataaagtgtgtgtgagtgtggtgaaCGAGAAGTGCCGCATCGATACAGAACTGCTGCCCTCGCTCTTTATGCGCTGCACCACTGACCCGGTGCGACGGGACAAGTATCCAGCTGTCACACACCTCAAATTCCTCACACGGGAGAACTCTGAGCAGGTACTGCTGTGTGCATCCAGTCAGATGGGGAGCATTGTAGAGTGCTGGTCCTTACGAAAGGAGGGGCTTCCAGTCAATAACATATTTCAGCATCGCTCACCTGTTGTGGGTGAGAAGCAGCCGATGATTCTGAAGTGGCGAATCCTTTCGGCCACAAATGATTTGGACCGTGTCTCTGCAGTGGCACTACCTAAACTGCccatctccatctccaacaCTGATCTTAAAGTCGCCTCTGACACAAAGTTTTGCCCAGGTCTTGGCCTGGCTTTGTCATTCCATGATGGCAGCATTCAAATACTGCATCGTCTGTCCCTTCACACCATGGGTATGTTCTATGGGTCCTCTGGTTCCTCCCAGCGAGTGGGAGACGAGCCAGCCATCAAACGGCAGAGAGCTGGAGGTCCTGCCGTCCACTTTAAAGCCCTGCAGTTTTCCTGGACATCTCTGGCTCTGGTCGGTGTGGACAACCATGGAAAGCTCCACATGATCCGTGTGTCCCCCTCCATGGGGCAGTTGTTGGACATGAACACTCTGCTGCGCCACCTGCTGTTCCTACTGGAGTACTGCATGGTGACAGGCTACGACTGGTGGGATGTGCTTCTGCATGTTCAGCCTGGGATGGTCCATAACCTGGTGGAGAAGCTCCATGAGGAGTACATGAGGCAGAATCAAGCCCTGCAGCAGGTGCTGGCTACCCGAATTGTAGCTGTGAAGGCGTCTCTATGTAAGCTGTCGTCTGCTACAGCTGCCCGGGCAAACGACTTCCACGCCAAGCTGCTCCTCATCGCCATCAGCTCGACACTCAAATCTCTGCTCAGACCCCACGTCCTCAACACACCAGACAAAAGCCCAGGAGACAGACTGGCGGAGATCTGCACCAAGAACACAGACACTGaCATTGACAAGGTGATGATTAACCTGAAGACAGAGGAGTTTGTTCTGGATGGACCTCCACTTCAGTCCCTTCAGCAGCTCATTCAATGGGTGGGCGACTTCGTGCTCTACCTGCTTGCCAATCTGCCCAACCAGGGCTCCATAGTTCGCCCAGGCTTCGGCTTCCTGCGGGACGGGCCCTCGCTGGGCATGCTGAGggagatgatggtgatgatccGCATCTGGGGCTTGCTGAAGCCTGGCTGCCTTCCCATCTACACAGCCACCTCTGACAACCAGGACAGCATGTCTCTTCTCTTCCGCCTCCTCACCAAGCTCTGGCTCTGCTCACGGGATGAGAGCCACCCTCAGGAACCGGATGAGACCCTGCTGGATGAATGCTGTCTACTGCCTAGCCAGCTGCTTGTGCCCAGCATGGACTGGCTGCCCATCAACGATGGCGTCATCACCAAAATCCAGAGCAAGCACCAGCTGCGGCTGCAGTTTGGCAAGCCCTACACCCTGCCTGGACTCAACCCCAACTCACAGATGGAGATTTTCTCCAGGAGTCCAGCATCACAGAGGATGGACAACCTGCGCTGTTTACACATGGGTATCTGTCCAACAGAGGAAAGCAAGGCCTGCACCAGGTGTGGCTGTGTAACAATGCTGCGCTCCCCAAACAAGACCAATGCTATGAAACAGTGGGAGCAGCGCTGGATTAAGAACTGTCTGTGTGGAGGACTCTGGAGAAAAATTCCCAACACATGAAACTTTCTGAAATCAGGTCATAGGTCATGGATATTAGATCATGTTCAAAGGATGTGCCACAGTCAGTCCTAAAGCCCCTGTTTGTCCAGCACTATTGCCCAGCTTCTGTGGGTCAGGTGACCGGTGAGTTTGTCAGAATTGCTGTAATGATCCAAACAGAAACAGCATCAATAAAGTGGTATTTTTCATGCCCAGATGATCATGAACGTTCACAATCACGTTTTAACCCTctgtaaatatcagtcatgttttgtattgtttttttgtaatgtttacaATAAATTCCAAGGCAGATTtcga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15159 MED16; mediator of RNA polymerase II transcription subunit 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57746 lncRNA upstream 384149 15421152 ~ 15421453 (+) True G42814
TU57745 lncRNA upstream 384480 15420712 ~ 15421122 (+) True G42813
TU57740 lncRNA upstream 390413 15414677 ~ 15415189 (+) True G42810
TU57739 lncRNA upstream 390413 15414877 ~ 15415189 (+) False G42810
TU57736 lncRNA upstream 426994 15378001 ~ 15378608 (+) True G42807
TU58039 lncRNA downstream 208694 16035198 ~ 16037119 (+) True G43035
TU58078 lncRNA downstream 425427 16251931 ~ 16253694 (+) True G43063
TU58077 lncRNA downstream 425719 16252223 ~ 16261729 (+) True G43062
TU58119 lncRNA downstream 564926 16391430 ~ 16398266 (+) False G43097
TU58121 lncRNA downstream 564926 16391430 ~ 16396001 (+) True G43097
XM_007240182.3 mRNA upstream 16713 15669627 ~ 15788889 (+) True grin3b
XM_007240181.3 mRNA upstream 169358 15520524 ~ 15636244 (+) True wdr18
XM_015603339.2 mRNA upstream 289107 15500288 ~ 15516495 (+) True LOC103032216
XM_007240179.3 mRNA upstream 378607 15417332 ~ 15426995 (+) False arrdc2
XM_007240177.3 mRNA upstream 378607 15421735 ~ 15426995 (+) True arrdc2
XM_007240185.3 mRNA downstream 1864 15828368 ~ 15851254 (+) True plppr3
XM_007240186.3 mRNA downstream 40200 15866704 ~ 15929841 (+) True palm
XM_022669689.1 mRNA downstream 55679 15882183 ~ 15929841 (+) False palm
XM_022669691.1 mRNA downstream 55684 15882188 ~ 15929841 (+) False palm
XM_022669692.1 mRNA downstream 55955 15882459 ~ 15929841 (+) False palm
TU57395 other upstream 906354 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 2183560 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 2355125 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 3090574 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 3172173 12632816 ~ 12633429 (+) True G42068
TU57948 other downstream 152065 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 152926 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 1367034 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 2185669 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 2360535 18187039 ~ 18240232 (+) True G43568

Expression Profile