RNA id: XM_022669753.1


Basic Information

Item Value
RNA id XM_022669753.1
length 2287
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC111192515
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 18199339 ~ 18203357 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTATATAAAGGCACTCATTCTAAGCATTCATCACAAACCACCAGCCATGAGAGCTGTTGTGCTTGCCCTGACTGTGGCCCTTGTGGCAAGTCAACAGATCAACCTTGTTCCAGAGTTTGCCGCTGGTAAGACCTATGTATACAAGTATGAGGGTCTGCTGTTGGGCGGTCTGCCTCAGGAGGGTCTGGGCAAGGCTGGTGTAAAAGTCAGCAGCAAGGTTCTCATCAGGGCTGAAGCATCGACCACCTTCCTTCTGAAGCTCCAGGATCCTCAGCTCTTTGAGTATGCCGGCATCTGGCCTCAGGATTCTTTTAGCCCCGCTGCAAAGCTCCTCGCCGCCCTGAACGCTCAGCTTCAAATTCCCATCAAATTTGAATATGCTAATGGTGTGGTTGGTAAGATTTACGCCCCTGCTGGAGTGTCTGCTACTGTCCTGAACTTGTACAGAGGAATCCTCAACATCCTTCAGCTCAACCTCAAGAACACCCAGAATGTCTATGAGATGCATGAgGCTGGAACTCATGGAGTCTGCAAGGCCCACTATATGATCAGTGAAGATGCAAAGACCAATCAGATTATTGTAAGAAAGTCTAAAGACTTGACCCACTGCCATGAAAGAGTCATCAAGGATATCGGTTTGGCTTATGCTGAGAAGTGTGCTGAATGCCAGCAGAGGCTTCAGAGTTTGACTGGAACTGCAACTCACACCTACATCATGAAGCCATCTGATGCTGGAGCTGTGGTCGCCGAGGCTACAGTTGAAGAGCTACACCAGTTCTCACTGTTCAATACCATCACTGGAGCAGCCCAGATGAAAGCCAAGCAAACTCTGACTCTTCTGGAGGTACAGAACACAGCTATTGCTCCAATCGGTGGTGATTATGCAGCTCGTGGATCCTTGAAGTACGAGTTTGCCACTGAAATTCTGCAAACCCCCATTCAGCTTCTGAAGATCAACAACGCCGAGGCTCAGATTGTAGAAGTTCTGAATCATCTGGCTACAAACAATATGGATGTGGTTCATGAAGATGCTCCACTGAAGTTCCTTCAGCTTGTCCAGCTTCTGCGTGTTGCTACTTTTGAGAAAATTCAAACCATTTGGGATCAGTACAAGACCAAACCAGTTCACAGACGTTGGATTCTGGATGCTGTCCCTGTTGTGGGTACACCAGTGGCACTGCGCTTCATTGAGGAAAAGTTTCATGCTGGTGAATTCACCACCGCTGAATTCACTCAGGCCCTACTGGTTGGTCTGCACATGGCCACTGCTGATCCAGCAGCTATTCAGCACACTGCTCGTCTGGCACTAAGCCCCAAAATCAAGGCaattcccaggcagtggcgtgAGGTGGTTATGCTTGGCTATGGTTCCATGGTTGCCAAACACTGTGCTGAAGATCCAGCCTGTTCTCCTGATCTCCTCAAGCCTATCCATGACCTTGCTGCTGAAGCCATTTCCAAGGCTGATATTTTTGAAGTCACCCTGGCTCTGAAGGCTCTGGGCAATGCTGGTCACCCTGCTAGCCTTAAACCCATCATGAAGATCCTGCCTGGatttggagctgctgctgcaaaCATGCCCATGAAAGTCCAAGTTGATGCCATCTTGGCTCTCAGGAACATTGCCAAGAAGGAGCCAAAGATGGTTCAGCCAGTGGCTCTGCAACTTTTTATGGATAGGACTCTTCATCCTGAAGTACGTATGGTTGCCTGTATTGCACTTGTCGAGACCAAGCCCTCAGCCGCTCTAATGACCACTGTTGCTGGAGCTATGGATAAAGAGCCCAGCATGGAAGTTGCCAGCTTCGCATACTCTTACATCAAGTCTCTGACCAGAAGCATGTCCCCTGATTTGATGAATGTGGCTGCTGCAGCTAATGTCGCCATCAGAATGTTGTGCCCCAAAATGGACAGACTGAGCTACCTTTCAAGCACTGCTCTCCATCTGGACCTTTATGTTTCTCCTGTCATGGTTGGTGCTGCTGGAAGTGCTTTCATCATCAATGATGCTGCCCACCAATCTTGCCAGACTGTTGTTGCAAAACTCGTGGCCTACTTGgctggagcagctgctgatgttcttgagGTTGGTGTGAGAACTGAGGGACTCCAAGAAGCTCTAAAGAGAACTCCTGCTGGAGATGAGAATGCTGATCGCATGACCAAGATAAAGCACACCTTGAAAGCACTGATGAACTGGAAGGCTCTCACCAGCTACTTCAGCCACTGGCCTCCATCTATGTGAAAACTCTTTGGACAGGAAATTGCTTTTGCCAATGTTGATA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58798 lncRNA upstream 15553 18183190 ~ 18183786 (+) True G43567
TU58795 lncRNA upstream 31449 18166883 ~ 18167890 (+) True G43564
TU58792 lncRNA upstream 41486 18152860 ~ 18157853 (+) True G43561
TU58790 lncRNA upstream 47601 18145211 ~ 18151738 (+) False samd13
TU58785 lncRNA upstream 55814 18141972 ~ 18143525 (+) False prkacb
TU58823 lncRNA downstream 46097 18249454 ~ 18251731 (+) True G43574
TU58917 lncRNA downstream 109416 18312773 ~ 18313342 (+) True G43638
TU58966 lncRNA downstream 260569 18463926 ~ 18464608 (+) True G43675
TU58963 lncRNA downstream 320417 18523774 ~ 18526441 (+) True G43672
TU59036 lncRNA downstream 531300 18734657 ~ 18734937 (+) True G43739
XM_007233199.3 mRNA upstream 17885 18176947 ~ 18181454 (+) True ctbs
XM_007233200.3 mRNA upstream 24212 18169693 ~ 18175127 (+) True rpf1
XM_007233196.3 mRNA upstream 32522 18159557 ~ 18166817 (+) True dnase2b
XM_007233195.3 mRNA upstream 46990 18145199 ~ 18152349 (+) True samd13
XM_022669751.1 mRNA upstream 46990 18148027 ~ 18152349 (+) False samd13
XM_022669752.1 mRNA downstream 35897 18239254 ~ 18246244 (+) True LOC103045882
XM_022669756.1 mRNA downstream 186716 18390073 ~ 18405402 (+) False ddx59
XM_007233216.3 mRNA downstream 196484 18399841 ~ 18405402 (+) True ddx59
XM_015601269.2 mRNA downstream 203203 18406560 ~ 18423568 (+) True kif14
XM_007233217.3 mRNA downstream 203597 18406954 ~ 18423568 (+) False kif14
TU58763 other upstream 184840 18012173 ~ 18014499 (+) True G43537
TU58501 other upstream 1003223 17193538 ~ 17196116 (+) True G43360
XR_002649941.1 other upstream 2214707 15979430 ~ 15984632 (+) True LOC103036127
TU57948 other upstream 2215814 15978569 ~ 15983525 (+) False LOC103036127
TU57395 other upstream 3300091 14895062 ~ 14899248 (+) True G42605
TU59278 other downstream 1519277 19722634 ~ 19770324 (+) False p3h2
TU59277 other downstream 1543256 19746613 ~ 19770324 (+) False p3h2
TU59285 other downstream 1605385 19808742 ~ 19864143 (+) True G43923
TU59490 other downstream 1927750 20131107 ~ 20137056 (+) True G44070
TU59785 other downstream 3766742 21970099 ~ 22030891 (+) True G44287

Expression Profile