RNA id: XM_022670142.1


Basic Information

Item Value
RNA id XM_022670142.1
length 1787
RNA type mRNA
GC content 0.50
exon number 9
gene id tmem44
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8382256 ~ 8400857 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTAGAGTACCTGGATCACGTGGCGGTGTTAAGGCGCGTGCTGCAgctgtgtgttgctgtggtatgctgcgggtgctgctgtgtgtgagtgatggAGGATGGGGGGTTGGTGGAGACTCTGTACCGCTGGAGAGACGCGCTGATCTGCGGCTCCTCTGCGGGAAAGAGCGGCTGTGTGTCCGCAACTCTGGGAGCTCTGTCCCTATCATCCCTGCTCATCTCCTGCTGCCTGCTTTTCTGCTACAGGTGTAAGGTAAATGCCTGTAATGCAGGGGGCGCCGTAGCCTGGGGCATTTACTGTTTAATTGGAGATTTCTGTAACACTGCTGGATCAGTACTCGCTCATCAACTACCTCTACAGatcATTATGGCCTTTTTTATGTTAACGTTGGACGTGTTGCTTTTAACTGCAGTCATTTTGCCCTTCTGTTGGTTTCACCACTCAAGAGCTGGCAGGAGAGCGCGGGTgatgagcaggaggaggaggcagaactctctggctgtgtttctgctgTTTGGGATGGGAGGATCTGTTTACTTTGGAATTCCGGTTAAACCCCACAGTCCGTCAGTTACCGGCTCGTCTGCGTCCGGCAGGAAGCTGCTCGGCGTTTTCCTGCAGGATGAGACGGAGCTGCTGGGGTACGTGCTGGGGCTGCTGTGGTTTGCCATCAGCTGGACCTCCAGGTTTCTCTTCTTCCTCAAAGCTGGCCGGGCAGAGACGGGTAGTCCTCTGTGGCTGTCCTCCAggggtctaaaagctctgtccgGTGGTCTTTACGCCTCTGCTATACTGGTCTATGATACACGGCTGGAGTCTATAGTGAGGGCGCTGCCATGGATCCTATCAGGAAGCTGCTGTGCCATTCTAGATGTTAttATTCTGTTTGTCTCTTGTTACAGAGTTTATTCTAATGGTCAGTCGGTTCAGCCGCTCAGTACAGACACTGCGTCTCTTTTAGGTCGTAGGCTTTCCTCTGGCCAGCTCAGCCCTAAAAAAGATAAACCTGCCAGAAAACTGCATCATCCCTCCAGGAGGAGCAGCACTGCCACAGAGGCTGAGATTGGATGTTACATGGATGTTCATTTACAGCCTGTTCGAAAGGTATGTCTGAAGGAGGTGACGATCACTCGGGAGGGCTCGGTCGACAGTCAGCCTCTGAGGAGATGTGTGAAGGTGGTCCGAGTGGATGAGTGTTATTCATCAGGGAGCACCACAGACTCCTCCTCCGTCAGCTCAGAATTGGAGTGGGACTTTGAGCAGACGAGTCCACAGTGGAGTTCACAGAGTGGAGAGCAGCACAGCATGGAGGCGTCCCTCCTGCAGGAGAAGACGCTGGATCAAAGGTCAAAGTGCAGCAGTGGGTCAAATTCGCCTGCCTGCTTCTGCCGCAGTTCTGATCCGGAGGAGCAGCCGGTTTCTGCATTACCTGACGCTAACTTGACTCGGTTAAATGATTGATTTCACAACCTTATCCTGGTGTtacataaatgattcagtatcggCGTATGATATAGTATGAtgtgtaataaaaaagagtaaagaTGAACTCTGCAGATTTCATAATCTGATGATTTACATTATTGTTTGATATTTGGCAGATGTTCTCATCCTAAACAATACAGTTAAATTATGTAACAGTGGGAGGGCCAACATAACGTACAGTAATTAGGACTCTTACCTGGAAGAGGGAATGGAACTCGAGTGTGCTGCATGgtgctgcattaaaaaaattgaatatcattgaaaagttactttatttaactCCTGTATtgaatagatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55122 lncRNA upstream 212719 8167779 ~ 8169537 (+) True G40952
TU55120 lncRNA upstream 216595 8165391 ~ 8165661 (+) True G40950
TU55119 lncRNA upstream 216985 8164952 ~ 8165271 (+) True G40949
TU55117 lncRNA upstream 218189 8163711 ~ 8164067 (+) True G40947
TU55082 lncRNA upstream 413833 7968116 ~ 7968423 (+) True G40916
XR_002649927.1 lncRNA downstream 8605 8409462 ~ 8454415 (+) True LOC111192502
TU55147 lncRNA downstream 8793 8409650 ~ 8454348 (+) False LOC111192502
TU55167 lncRNA downstream 98906 8499763 ~ 8500064 (+) True G40987
TU55165 lncRNA downstream 100057 8500914 ~ 8502742 (+) True G40985
TU55166 lncRNA downstream 102013 8502870 ~ 8504310 (+) True G40986
XM_022669536.1 mRNA upstream 4431 8361837 ~ 8377825 (+) True lsg1
XM_007252576.3 mRNA upstream 219298 8102275 ~ 8162958 (+) True xxylt1
XM_007252577.2 mRNA upstream 1368469 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA upstream 1368469 6877772 ~ 7013787 (+) False pcdh17
XM_022669530.1 mRNA upstream 2546169 5814515 ~ 5836087 (+) True lims1
XM_022670147.1 mRNA downstream 58658 8459515 ~ 8498939 (+) True atp13a3
XM_022669537.1 mRNA downstream 111247 8512104 ~ 8523308 (+) True LOC103028988
XM_022669538.1 mRNA downstream 151113 8551970 ~ 8636478 (+) True col6a1
XM_022669540.1 mRNA downstream 260142 8660999 ~ 8693477 (+) False col6a2
XM_022669539.1 mRNA downstream 260144 8661001 ~ 8701071 (+) True col6a2
XR_001518717.2 other upstream 555342 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 1848582 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3071449 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4246671 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 5644039 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 1594896 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 1891480 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 2354352 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 3170369 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 3353486 11754343 ~ 11757209 (+) False tmem221

Expression Profile