RNA id: XM_022670144.1


Basic Information

Item Value
RNA id XM_022670144.1
length 653
RNA type mRNA
GC content 0.58
exon number 3
gene id adamts17
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 5762651 ~ 5779274 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGGAAAGTTCTCTCTGCAGTCTGCGCTCGCCGCTTCGCCTGCAGTCATGCCCGGCTCCCCCGCTCtcctgctgccgctgctgctgcccgGCTTCTCCCTGCTCCTCCGCGGGCTGGAGGCTTCAGCAGCACACGAGACTGTACTGTATGAGACTGACGTGGTTCTGCCTCTGGAGCTTAAGTCTGGGCAGGTGCTGCAGGAAGCATCCAGCTGGAGCGTGGGCCGCAGGAGACGTTCAGACGCTCACCCAGACCACCTGTTTCTGTCTCTGCCCGCCTTCGGCCAGGAGCTTTACTTAGAGCTGCAGAGGGACGAGGCGTTCCTCTCCGAGGGTTTCGTGGTGGAGGAGAGGAGTGAAGCTGGGAGCGTCCAACACGAGCCAAACTTTAAAGGACTGTCCTGCTTCTACACCGGAGCTGTTCTCAACCACACTAACTCGTTTGCCTCGCTGGATGCCTGTGGTGGTCTGACTGGACTGGTGCAAACTGGAGACGAGACTCTGTTCATTGAGCCGGTGGAGTCGGCAGTGGACTCGTTTTCTGGTCGGGAACACAAGGTGGTCCGTCAAAAACGCTCCTCTGAGGAAACGTCCCAGTCTACAACCAACGGCCCGAAATACTGCCAAATTATCCAAGGTGAGAAAAGACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54748 lncRNA upstream 12939 5749131 ~ 5749712 (+) True G40617
TU54674 lncRNA upstream 304027 5445193 ~ 5458624 (+) True G40556
TU54663 lncRNA upstream 450307 5308546 ~ 5312344 (+) True snrpa1
TU54611 lncRNA upstream 599322 5158991 ~ 5163329 (+) False G40511
TU54612 lncRNA upstream 599322 5158991 ~ 5163329 (+) False G40511
TU54802 lncRNA downstream 61280 5840554 ~ 5840773 (+) True G40660
TU54837 lncRNA downstream 285124 6064398 ~ 6064642 (+) True G40692
TU54840 lncRNA downstream 312597 6091871 ~ 6092282 (+) True G40695
TU54842 lncRNA downstream 315035 6094309 ~ 6129206 (+) True G40697
TU54854 lncRNA downstream 418685 6197959 ~ 6198236 (+) True G40709
XM_015602437.2 mRNA upstream 12286 5722876 ~ 5750365 (+) False cers3
XM_007237231.3 mRNA upstream 12286 5722889 ~ 5750365 (+) False cers3
XM_007237232.3 mRNA upstream 12286 5728545 ~ 5750365 (+) True cers3
XM_007237230.3 mRNA upstream 12286 5728545 ~ 5750365 (+) False cers3
XM_015602438.2 mRNA upstream 12286 5728545 ~ 5750365 (+) False cers3
XM_022669529.1 mRNA downstream 35240 5814514 ~ 5835086 (+) False lims1
XM_022669528.1 mRNA downstream 35240 5814514 ~ 5833875 (+) False lims1
XM_022669530.1 mRNA downstream 35241 5814515 ~ 5836087 (+) True lims1
XM_007252577.2 mRNA downstream 1098498 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA downstream 1098498 6877772 ~ 7013787 (+) False pcdh17
TU54660 other upstream 451844 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 1627066 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 2951155 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 3024434 2735596 ~ 2738217 (+) False LOC103029230
TU53709 other upstream 3976415 1783424 ~ 1786236 (+) False muc2
TU54910 other downstream 754091 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 2047249 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 4216479 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 4513063 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 4975935 10755209 ~ 10755281 (+) True trnam-cau_21

Expression Profile