RNA id: XM_022670147.1


Basic Information

Item Value
RNA id XM_022670147.1
length 3882
RNA type mRNA
GC content 0.53
exon number 30
gene id atp13a3
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8459515 ~ 8498939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtttgtgtgtgtgtgtgtttttcacattttttcatgtGAATCAGGATGAGTTTAAGCGCTGGTTCCGGGCCAAGGTGCGTGTGATGCTGGCCCCAGGAAAGAACCCTTACATCAGCCTGGACTCTAAGACCGCCACGCCCACCGCCAACGGCCACATGCCCCGCCCCTCCGACACCCCAGCCGAGGGGTTCATCAGGAAATACGCCGAGTACCAGCCTGtgcagATCCGGTATTTTACGCTCCATAGCACAAAGTACTATTGGAACGACGCCATCCAGAACTTTGGAGTATTGACGGGTCTGGAGGATCTGGGGTTGAGATATTCCGGCCTCCACTCGGAGCACAGCGGCGGCCTCAGCCAAGACCAGCAGGAGTACAGgaaaTTATTTTTTGGAGTGAATGAAATTGCTGTGAAAGTGCCTTCCCTTTTCAAGCTGCTAATCAAGGAGGTCCTCAACCCCTTCTACATCTTCCAGCTCTTCAGTGTTATCCTATGGAGTGCAGATGAATACTATTACTACGCTATGGCTATAGTGTTAATGTCTGTCATATCGATAGCTGCCTCTCTCTACACCATCAAAAAGcaataCGTCATGTTACACGACATGGTGGCTGCCCACAGTATTGTGCGTGTATCAGTCTGCAGAGCTAATAACGAGATCGAAGAGGCGATGTCCACAGATCTGGTACCCGGTGACGTCATGGTCATCCCCAGCAATGGCACCATCATGCCCTGTGACGCAGTGCTGATCAGCGGAACCTGCATCGTCAATGAGAGCATGCTGACAGGCGAGAGCGTTCCCGTCACCAAGACCAACCTGCCCAACCCGCCTCCGGGAGAGAAAGGGGCGGAGGAGGACCAGGTCTACAGCATCGAGGAGCATAAGAGACACACACTGTTCTGTGGAACCAACGTCATCCAGACCCGATTCTACTCAGGAGAACTGGTCAAAGCTGTGGTGGTCAGGACCGGCTTCAGTACAGCTAAAGGTCAGCTGGTTCGCTCTATCCTGTATCCTAAGCCCACGGACTTTAAGCTGTACAGAGATGCCTATATGTTCCTGCTCTGTCTGGTGGGAGTGGCTGGCATCGGCTTCGTCTACTCAATCGTCCTGAGCATTATGAACAAGGTTCCAGCTAAGACTATCATTATCGAGTCTCTGgacatcatcaccatcactgtGCCCCCTGCACTACCAGCAGCCTTGACAGCAGGCATTGTGTACGCCCAGCGGCGGCTCAAAAAACTGGGCATCTTCTGCATCAGTCCACAGAGAATCAACATCTGTGGGCAGCTAAACCTCATCTGCTTCGACAAGACGGGCACGCTCACCGAGGACGGGCTGGATCTGTGGGGCGTGCAGAGGGTGGAGAATGGAAGCTTCCACCACACAGAGGAAAATGCCTACAAGGAGAACCTGGTGAAGACTCACTTCGTGGCCTGCATGGCCACCTGTCACTCTCTCACCAAGATCGAGGGGCAGCTTTCTGGAGACCCTCTGGACCTGAAGATGTTTGAGGCCACAGGCTGGATCCTAGAGGAGGCTACAGAGGAGGAGACTTCTCTCCATAACCGGATCATGCCCACTGTAGTGCGTCCCCCCAAACAGCTTCTTCCAGAACCTGCGATGTCTCCAGAGCAGGACATGGAGCTGTATGAACTCTCAGTGTCGTACGAGATTGGAATCGTGCGTCAGTTCCCGTTCTCCTCGGCGCTGCAGAGGATGAGTGTGGTGGCTCGTCTGCTTGGGGAGAAGAGGATGGATGCCTACGTTAAGGGGGCTCCAGAGGTGGTGGCGGGTCTGTGCAAGAGAGAGACGGTGCCGCCGGACTTCTCAGAGGTACTGGAGGACTACACCAAGCAAGGCTTCCGCGTCATAGCCCTCGCCCACCGACGACTGGAGTCCAAACTCACCTGGCACAAAGTACAGAATGTTAACAGGGATCATATAGAATCCAACATGGAGTTCCTGGGACTGATCATCATGCAGAACAAGTTGAAGGCTGAGACTCCGGGAGTGCTGGAGGACCTCCGACGGGCAAACATCCGCACAGTCATGGTGACGGGTGACAACATGCTGACCGCCATCTCGGTGGCGCGGGACTGCGGCATGATCCCGCCACAGGACCGAGTCATCATTGCGGACGCCCTGCCCCCCAAAGACGGACAAGCGGCCAAGATAAACTGGCGCTACGCCGACAATCCCAGCAAGCTCTCCGGCAAGCCCGCTGTACTGGAGGAGGTGCAGATCAGCTTGGATGATAAGCCTGAGGAGCAGAAGGCTGTGGAGCAGTACCACTTTGCCATGAGTGGCAAATCCTTCGCTGTGATCACTGAGCATTTCCAGGATCTGCTCCAGAAGCTGGTTCTGCATGGGACAGTGTTCGCTAGAATGGCTCCAGATCAGAAGACTCAGCTGGTGGAGACGCTACAGAGTGTTGATTACTTTGTTGGAATGTGTGGAGATGGCGCCAACGACTGTGGTGCTCTGAAGAGAGCTCACGGTGGCATCTCTCTGTCTGAGCTGGAAGCCTCAGTGGCCTCTCCGTTCACCTCCAGAACCCCCAACATCTCCTGTGTGCCCAACCTCATCAGAGAAGGCCGAGCAGCTCTCATCACTTCCTTCTGTGTGTTTAAGTTCATGGCTCTGTACAGCATCATCCAGTACATCAGCGTCACGCTGCTCTACTACATCCTCAGCAATCTTGGAGACTTTCAGTTTCTCTTTATTGACATCGCAATCATCCTTCTTATTGTGTTTACCAtgagtCTGAATTCAGCGTGGAAGGAGCTGGTGTCTCGGCGCCCCCCCTCCGGTCTGATCTCAGGTCCTCTGCTCTTCTCTGTAATGACTCAGATCCTCATCTGCCTGGGCTTCCAGACCCTCGCCTTCCTCATGGTCCGCCATGAGCCGTGGTACGAGACCTGGACCCCGGAGTCCGATGCCTGCAATACCTCCATCCACCTCAACATCTCAGAGAACATGACGGAGATGGAGGAGCCCGATGAACACAACATAATGAACTACGAGAACACTACCCTGTTCTACGTGTCCTCGTTTCAGTACCTCATCGTCGCCATCGTTTTCTCCAAAGGCAAACCTTTCCGCCAGCCCAGCTACAAAAACTGGCCTTTCATGTTGTCTGTGCTCAGCCTCTACGTGTTTCTGTTCGCCATTATGCTTTTCCCTGTTCCTGAAATCGATGAGTTTTTAGAGATTGTGTGTGTTCCTATGAAGTGGCGGCTAACTATGGTATTCATAgtgctggctaatgctgctgtgtCTGTCCTAGTGGAGACCCTCGTCCTTGACGTCGTCTTATGGAAGCTTGTGTTCAGCCGAGACAAGCAGGCCAGCTATGGCGTCCTCCCAGCCGCCCCGCCACCACAGGGAGGACTAGACTGGTGTGGATCCAGGTACCTCCCCTGGCTGTGCTGCCGGAGGAGGAGGGTCCCCAAAGCGAGATACATGCATCTGGCCCAGGAACTGAGAGTGGACCCGGACTGGCCACCCAAACCCAAAACCACCACAGAAGCCAAACCGCCGTCTCTGCCGGAAAACAGCTCCTACCAAATCATGTCTACTTCCTAGCGCCCCCTAGCCACGACCTGCGACCTCGTATCGGCGTATCATACTGGGATCACCACTGGTGGGGATGTcactatataataaaatataatatacattttttttggaagAGATGCTCCGTAAACTGGGACATAAACTGGGGGAAGACTGGTAAGCTGATGCTAATGAACTACGGAAAACGGATTACGgaattttgtctttttctgcCCGGAGGAAACGGTCCGAAGAGAACAAACAGTATCAGAGTCAGTATCAGTATGAGCCCGCTGGCCCtgcccccccctttttttt

Function

GO: NA

KEGG:

id description
K14951 ATP13A3_4_5; cation-transporting P-type ATPase 13A3/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649927.1 lncRNA upstream 5100 8409462 ~ 8454415 (+) True LOC111192502
TU55147 lncRNA upstream 5167 8409650 ~ 8454348 (+) False LOC111192502
TU55122 lncRNA upstream 289978 8167779 ~ 8169537 (+) True G40952
TU55120 lncRNA upstream 293854 8165391 ~ 8165661 (+) True G40950
TU55119 lncRNA upstream 294244 8164952 ~ 8165271 (+) True G40949
TU55167 lncRNA downstream 824 8499763 ~ 8500064 (+) True G40987
TU55165 lncRNA downstream 1975 8500914 ~ 8502742 (+) True G40985
TU55166 lncRNA downstream 3931 8502870 ~ 8504310 (+) True G40986
TU55164 lncRNA downstream 5679 8504618 ~ 8511612 (+) False G40984
TU55163 lncRNA downstream 6941 8505880 ~ 8509252 (+) True G40984
XM_022670142.1 mRNA upstream 58658 8382256 ~ 8400857 (+) True tmem44
XM_022669536.1 mRNA upstream 81690 8361837 ~ 8377825 (+) True lsg1
XM_007252576.3 mRNA upstream 296557 8102275 ~ 8162958 (+) True xxylt1
XM_007252577.2 mRNA upstream 1445728 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA upstream 1445728 6877772 ~ 7013787 (+) False pcdh17
XM_022669537.1 mRNA downstream 13165 8512104 ~ 8523308 (+) True LOC103028988
XM_022669538.1 mRNA downstream 53031 8551970 ~ 8636478 (+) True col6a1
XM_022669540.1 mRNA downstream 162060 8660999 ~ 8693477 (+) False col6a2
XM_022669539.1 mRNA downstream 162062 8661001 ~ 8701071 (+) True col6a2
XM_022669541.1 mRNA downstream 203503 8702442 ~ 8716742 (+) True LOC103028050
XR_001518717.2 other upstream 632601 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 1925841 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3148708 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4323930 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 5721298 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 1496814 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 1793398 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 2256270 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 3072287 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 3255404 11754343 ~ 11757209 (+) False tmem221

Expression Profile