RNA id: XR_002649912.1


Basic Information

Item Value
RNA id XR_002649912.1
length 1151
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC111192488
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 248773 ~ 255441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCCCAGAGTGCTATTACCAAAAAATGCCAGAGAGCTCGGGGGTCTGAAGGTGCCGCTATTCAGGAGGCTAAACCTGTTGCTATGGTGCTTCGGTGAGGAGTGTTACTGGTTGAGGTTTCCAAAGGGGACGCTACTGAGAAGCTGGCTCACCAAGTCCCGACCCAGACTGCTGCTACTGATTGCAGGCTTGAAGAGGCCTCAGGTCACCCTCATGAGAAGGAAGAGGATGAAGCGCACAAAAATAGCAAAGGCCACGTAAGCGAACCTGCAGCCGAATGCCACATTTCTCCTGAGTCACTGAGAGTAGCCCTGCCTGCTGTAGAAATGGAAGAAGCCCAAGATACGGAGGAAATAACTTATCAACTGGTGCTGACTCAACGAACTGACCACAAAAGCAAACTGGAGAGAGGATCGGAGTTTGTCGTGAAAGCAAGAGACCCGCCACAGAGGTCCAGACCCCCCGACTAAAACCCGGACCCACTCTCACCCCACACACGGCCATGTGTACATCCCTCCTCTTTCAAAAATACACCTCTGTTATGGTTTCTGACACTACACTGAGTGTGACTgtacattatttttcattttgctgcCAAAAGCCTGGCTGAACGGAGGAGCTCTTTATTCCTGTGTTCTCTGGTCCCAGGTTTTGGTTttgttctgtgtgtgagtggatggatataagaaaaaagaagaaaaaaaaaaaacccattgtAGTTCTTGAGGTAGACAGATGAAGTTATTCCAATAGTTCCAACAACAAAATGGGACTGaacatatttatgaaaataattatacttattttaatataattaatttttcattaattacaaaacatacaaacatattttacacagaaatgATTCCATCACTGATTACTGGTGATAACCattggtttaaataaaaatgtccattttggacaagaaaagaaaaaaacaacaacaaaaaaagcttgCACAGTTTGAAAGTTTACATTTACAAAcatcttattttaatttctgtcCTTTATCCTGtttatattgtcttttttttttacttttagctcACCATGACATACCGCACTTTGACAAAATCTGACACATTTACTTTTCATCTATTCATAGGGTTTACATACATAATGTTTCACCAAATAAacaaggtaacacttta

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0015250 water channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53006 lncRNA upstream 20516 220144 ~ 228257 (+) True G39331
TU53001 lncRNA upstream 65933 174825 ~ 182840 (+) True G39327
TU52996 lncRNA upstream 94485 153892 ~ 154288 (+) True G39322
TU52942 lncRNA upstream 204555 43855 ~ 44218 (+) True G39284
TU53021 lncRNA downstream 39258 294699 ~ 295077 (+) True G39346
TU53022 lncRNA downstream 39728 295169 ~ 295569 (+) True G39347
TU53030 lncRNA downstream 113702 369143 ~ 369781 (+) True G39352
TU53025 lncRNA downstream 155694 411135 ~ 412188 (+) True G39349
TU53053 lncRNA downstream 281664 537105 ~ 538332 (+) True G39372
XM_022670127.1 mRNA upstream 9777 159102 ~ 238996 (+) True LOC103034506
XM_022669458.1 mRNA upstream 168743 32499 ~ 80030 (+) True LOC103033866
XM_022669459.1 mRNA upstream 170381 32499 ~ 78392 (+) False LOC103033866
XM_022669460.1 mRNA upstream 170381 32499 ~ 78392 (+) False LOC103033866
XM_022669457.1 mRNA upstream 224902 506 ~ 23871 (+) True ptk7
XM_022669464.1 mRNA downstream 26144 281585 ~ 291022 (+) True commd2
XM_022669465.1 mRNA downstream 41826 297267 ~ 380545 (+) True wwtr1
XM_022669466.1 mRNA downstream 41828 297269 ~ 378499 (+) False wwtr1
XM_022669467.1 mRNA downstream 41828 297269 ~ 378499 (+) False wwtr1
XM_022669469.1 mRNA downstream 161927 417368 ~ 447315 (+) True LOC103032290
XR_002649913.1 other downstream 26144 281585 ~ 291022 (+) False commd2
XR_455709.3 other downstream 667316 922757 ~ 963284 (+) False plekho2
TU53369 other downstream 951346 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 964365 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 1155005 1410446 ~ 1413799 (+) False LOC111192494

Expression Profile