RNA id: XR_002649914.1


Basic Information

Item Value
RNA id XR_002649914.1
length 277
lncRNA type inter_gene
GC content 0.56
exon number 3
gene id LOC111192489
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 601856 ~ 603927 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGCTACGCTGGTCGCTCTCTTTAGGAACGACGCAGCCACATCCTCAGCGAAGCTGACGTCACCATTTTGCTACTTGAAGAAGACGGGTAATTTCAGCACACCTGTCACACACTTAGACCAGAACTGGACCTACTGCTGAACGCTCAGCAAGCTCATTCAACACTGTCTAAgAAGTAGAAACCAGACGCTGTTGGTCGCtcttcccctcctccctccccgccgcctccaggttggtcccgtttggttgcccgggggttggctccgccctgtcttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53159 lncRNA upstream 54043 547609 ~ 547813 (+) True G39459
TU53157 lncRNA upstream 54504 547081 ~ 547352 (+) True G39457
TU53152 lncRNA upstream 62028 539498 ~ 539828 (+) True G39452
TU53053 lncRNA upstream 63524 537105 ~ 538332 (+) True G39372
TU53215 lncRNA downstream 108906 712833 ~ 715218 (+) True G39504
TU53217 lncRNA downstream 141641 745568 ~ 749938 (+) True G39506
TU53218 lncRNA downstream 141641 745568 ~ 750620 (+) False G39506
TU53223 lncRNA downstream 146895 750822 ~ 753837 (+) True G39511
TU53225 lncRNA downstream 163411 767338 ~ 767614 (+) True G39512
XM_022669471.1 mRNA upstream 68229 479272 ~ 533627 (+) True cp
XM_007234270.3 mRNA upstream 130652 461480 ~ 471204 (+) True LOC103032607
XM_022669469.1 mRNA upstream 154541 417368 ~ 447315 (+) True LOC103032290
XM_015601581.2 mRNA upstream 154541 417385 ~ 447315 (+) False LOC103032290
XM_022669467.1 mRNA upstream 223357 297269 ~ 378499 (+) False wwtr1
XM_022669472.1 mRNA downstream 14230 618157 ~ 637895 (+) True LOC103036425
XM_007239785.3 mRNA downstream 14231 618158 ~ 637895 (+) False LOC103036425
XM_007239783.3 mRNA downstream 67954 671881 ~ 681622 (+) False immp1l
XM_007239784.2 mRNA downstream 68146 672073 ~ 681622 (+) False immp1l
XM_022669474.1 mRNA downstream 71822 675749 ~ 681622 (+) True immp1l
XR_002649913.1 other upstream 310834 281585 ~ 291022 (+) False commd2
XR_455709.3 other downstream 318830 922757 ~ 963284 (+) False plekho2
TU53369 other downstream 602860 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 615879 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 806519 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 1175764 1779691 ~ 1782660 (+) False muc2

Expression Profile