RNA id: TU113547


Basic Information

Item Value
RNA id TU113547
length 448
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC107197841
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28970264 ~ 28970839 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTACATATCACAAGGCTAAtactatatagtgtatagtgagcTGAACTAAAAGGGACAGTAGTGAGGCAGTTCCCTTGTGAACTATTATAAGCTGAGTTCAGCATGAATGGAGCTCTCTTATACACACTGTGGCTGCTTCTACTGAAAAGTTCTTACAGTGAAGCAGTTCTGATCACACAGTGGCCTAAAGACATCATAAGTCCATCAGGAGCATCAGTGGACATGCACTGTTACCAAAATGACACGGATTATGACTATCTGTACTGGTACCGACAGCTCAAAGGAAAAGAACCAGCACTTATAGGCAGATTTGTAGCTGGCTCTGCCACGTATGAGAAAGGTTTTGAGAGTGGCTTCAGCATCtccagcacaaaaaaaaagaaatggtccCTGAATGTAGCTATCAAGGAGGACAGCAATGCTGTTTTCTTTTGTGCTGCTAGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113546 lncRNA upstream 44088 28925610 ~ 28926176 (+) True G84298
TU113544 lncRNA upstream 144988 28823824 ~ 28825276 (+) True G84296
TU113542 lncRNA upstream 166943 28803114 ~ 28803321 (+) True G84294
TU113538 lncRNA upstream 197429 28770168 ~ 28772835 (+) True G84291
TU113516 lncRNA upstream 247213 28705893 ~ 28723051 (+) True G84280
TU113548 lncRNA downstream 8646 28979473 ~ 28979778 (+) True G84300
TU113560 lncRNA downstream 28882 28999709 ~ 29009835 (+) True LOC103045392
TU113565 lncRNA downstream 41764 29012591 ~ 29018336 (+) True G84307
TU113567 lncRNA downstream 44190 29015017 ~ 29015457 (+) True G84308
TU113578 lncRNA downstream 56461 29027288 ~ 29027823 (+) True G84313
XM_022672486.1 mRNA upstream 1236 28854283 ~ 28969028 (+) True LOC111193134
XM_007257310.3 mRNA upstream 169025 28775149 ~ 28801239 (+) True arel1
XM_007257327.2 mRNA upstream 221836 28739241 ~ 28748428 (+) True LOC103029222
XM_015607893.2 mRNA upstream 294601 28662092 ~ 28675663 (+) True dlst
XM_022673105.1 mRNA upstream 410170 28428946 ~ 28560094 (+) True esrrb
XM_022673123.1 mRNA downstream 216748 29187575 ~ 29215673 (+) True adi1
XM_007257305.2 mRNA downstream 294226 29265053 ~ 29324443 (+) True eipr1
XM_022673125.1 mRNA downstream 443685 29414512 ~ 29625594 (+) False LOC103038403
XM_022673128.1 mRNA downstream 462999 29433826 ~ 29610931 (+) False LOC103038403
XM_022673129.1 mRNA downstream 462999 29433826 ~ 29610931 (+) False LOC103038403
TU113122 other upstream 1150717 27815805 ~ 27819547 (+) False fam98b
TU112857 other upstream 2222513 26727823 ~ 26747751 (+) False fermt2
TU112859 other upstream 2222513 26727908 ~ 26747751 (+) False fermt2
trnay-gua_9 other upstream 2462139 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 2570997 26392890 ~ 26399267 (+) False spata7
LOC103045392 other downstream 28675 28999502 ~ 29000106 (+) False LOC103045392
TU113562 other downstream 33267 29004094 ~ 29025114 (+) False LOC103045392
LOC111193240 other downstream 70152 29040979 ~ 29041607 (+) True LOC111193240
LOC111193135 other downstream 72390 29043217 ~ 29043739 (+) True LOC111193135
LOC107197844 other downstream 101064 29071891 ~ 29078898 (+) True LOC107197844

Expression Profile