RNA id: LOC111193240


Basic Information

Item Value
RNA id LOC111193240
length 468
RNA type V_segment
GC content 0.42
exon number 2
gene id LOC111193240
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29040979 ~ 29041607 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCAGCTCTGTGTTGGACAGAATGagatttatttttgtcattttagctTTACTTCTAACAATACATGCATCCAGCGGACTCAACATTATTCAGAAGCCTGATATATTCGCCAACCAGGGTTCCTCTGTGATTCTACACTGTGAGCAAGATAATGCAGACTACTACAGGATGTCCTGGTACCGACAAACAAGTGATAATCACACTCTAGAACTGCTAGCTTTTTCTATGGTTCAAGGTAGTCAAAGCATTGAGCCTCCGTTTGATAAAGCTGATAAATACATAATGACCCGTCCAGAGGTGCTGAAGGGAACGCTGCAGATAGAGAAGCTGGAGGCTGCAGACTCTGCTTTATATTACTGTGCTACAAGTCTGACACAGTAACTCAGATCAGTTTAACAGTCAGTCATTAACCTCTACAGTAGAGTAATGTGTGATGGTGAGGTTCACCTGGACTCGTGGTTCATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113578 lncRNA upstream 13156 29027288 ~ 29027823 (+) True G84313
TU113565 lncRNA upstream 22643 29012591 ~ 29018336 (+) True G84307
TU113567 lncRNA upstream 25522 29015017 ~ 29015457 (+) True G84308
TU113560 lncRNA upstream 31144 28999709 ~ 29009835 (+) True LOC103045392
TU113548 lncRNA upstream 61201 28979473 ~ 28979778 (+) True G84300
TU113571 lncRNA downstream 5136 29046743 ~ 29071659 (+) True G84311
TU113575 lncRNA downstream 5136 29046743 ~ 29071659 (+) False G84311
TU113572 lncRNA downstream 25316 29066923 ~ 29071659 (+) False G84311
TU113577 lncRNA downstream 35509 29077116 ~ 29078836 (+) False LOC107197844
TU113690 lncRNA downstream 62124 29103731 ~ 29103978 (+) True G84402
XM_022672486.1 mRNA upstream 71951 28854283 ~ 28969028 (+) True LOC111193134
XM_007257310.3 mRNA upstream 239740 28775149 ~ 28801239 (+) True arel1
XM_007257327.2 mRNA upstream 292551 28739241 ~ 28748428 (+) True LOC103029222
XM_015607893.2 mRNA upstream 365316 28662092 ~ 28675663 (+) True dlst
XM_007257335.3 mRNA upstream 480885 28489979 ~ 28560094 (+) False esrrb
XM_022673123.1 mRNA downstream 145968 29187575 ~ 29215673 (+) True adi1
XM_007257305.2 mRNA downstream 223446 29265053 ~ 29324443 (+) True eipr1
XM_022673125.1 mRNA downstream 372905 29414512 ~ 29625594 (+) False LOC103038403
XM_022673128.1 mRNA downstream 392219 29433826 ~ 29610931 (+) False LOC103038403
XM_022673129.1 mRNA downstream 392219 29433826 ~ 29610931 (+) False LOC103038403
TU113562 other upstream 15865 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 40873 28999502 ~ 29000106 (+) False LOC103045392
LOC107197841 other upstream 70140 28970279 ~ 28970839 (+) False LOC107197841
TU113547 other upstream 70152 28970264 ~ 28970827 (+) True LOC107197841
TU113122 other upstream 1221432 27815805 ~ 27819547 (+) False fam98b
LOC111193135 other downstream 1610 29043217 ~ 29043739 (+) True LOC111193135
LOC107197844 other downstream 30284 29071891 ~ 29078898 (+) True LOC107197844
XR_002650381.1 other downstream 2413377 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 2781979 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 3157576 32199183 ~ 32218762 (+) True LOC103035447

Expression Profile