RNA id: NM_001291252.1


Basic Information

Item Value
RNA id NM_001291252.1
length 2197
RNA type mRNA
GC content 0.51
exon number 4
gene id bmp4
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26604718 ~ 26613764 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGATCAGTCTGAGAGTGAGGGAGCGCGAGCgagtgtgagtaagtgagtgagcgagtgtgtTGGTGAGAGTCGCGCGCGCCCTGCTCTGGAGCTACCCGCCTGCCCGCGCTCTGTCCCGGGACAGTTCGGACCTAATGAGCCGCGCGAGCTTCTGGCAGCGCTCTGACCCGTGTTTACCGGACTTGTGTCGCGAGGCCTGAGCGCGTTTGGAGGAGCCCGTGCGCCCGTCCCGTTTCGGTTTCGCTCTGAGGACACCGCGCCTCTACCCATGGACAAGACTCTCTCCAAAGTCCTCAAGCAGCCTCCCAGCACCACGTAACATTTCCTCAAAGAACTCGTCCGGCGTCGGCTCCCAACAAACATGGACTGTTTTCCCATGCTTTATTTTCTGTCGAGACATCATGATTCCTGGTAATCGAATGCTGATGGTCATTTTATTATGCCAAGTCGTACTGGGAGAGAGCAACCATGCTAGTTTGATACCTGAGGAAGGGAAGAAGAAAGTGTCGGGTCATCACCCGGGTCAGAGTCATGAACTGCTGCGGGACTTTGAGGCCACGCTGCTGCACATGTTCGGCCTGCAGAGGCGGCCACGGCCCAGCCGCTCAGCAGTGGTGCCCCAGTATCTGCTGGACCTCTATAGGCTTCAATCGGGCGAGGCGGACGAGGCCGGAGCGCAAGAGGTCAACTTTGAGTACCCCGAGAGGTCCACGAGCCGAGCCAACACTGTAAGAGCATTCCACCATGAAGAGCACATGGAGCAGGTGCCGTCAGACGGGCCATACATGACTGGCACTCCACTGCGCTTCATCTTTAACCTCAGTAGCATCCCAGAAGACGAGCTGCTGTCCACAGCCGAGCTGCGTTTGTACAGGCGGCAGATCGAAGAGGCCATCTCAGAGGTCCAGGACGAGGGAAACGAGGGCCTCCACCGGATAAACGTGTACGAGGTGCTGAAGCCGCCGCGCTCTGGGCAGCTAATCACGCGGCTTCTGGACACAAGACTGGTGCACCACAACACGTCCAGCTGGGAGAGCTTTGACGTGAGTCCAGCTGTGCTGCGCTGGACTCGCGACCGCTTGCCCAATCACGGGCTGGCCTTGGAGGTGCTACACCTGAACCAAACGCCTCGGCACCAGGGCAAGCACGTCCGCATCAGCCGCTCCCTGCACCAAGCTCCAGACGAAGACTGGGACCAGCTGCGCCCACTGTTGGTGACTTTTGGCCACGATGGCAAAGGCCACCCGTTAACACGCAGGACCAAACGCAGCGCCAAGCAGCGAGGCCGCAAGCGCAATCGCAACTGCCGGAGACATGCGCTGTATGTGGACTTCAGTGACGTGGGCTGGAATGACTGGATAGTAGCCCCTCCTGGCTACCAGGCCTACTACTGTCATGGGGAATGCCCATTCCCTCTGGCGGACCATCTGAACTCCACTAACCACGCTATTGTACAAACACTGGTCAACTCGGTGAACAGTAATATCCCCAAGGCCTGCTGCGTGCCCACTGAGCTCAGTGCCATCTCAATGCTCTACTTGGACGAGACTGACAGGGTGGTCCTGAAAAACTACCAAGAAATGGTAGTGGAGGGCTGCGGCTGCCGCTAGCTGGGTTACGAAAAATCCAGCCGGCCCCATTCTACGCTCAAATATCTTCACTTGGACGCTTATTTATAACGTTTATTTTGAGATGTATGTTTGTCTCCTTTTTGTTTCCTTGACCATATGATCATATATtttgacaaaatatatatatatttatatctacatattaaaaaaataaaagtgagaccttattttaaacattaataagaaTCTGTACAACTTTTCATAATGTATATTAGAGTGTATAAGGGTTTTTAAATGAGaaaagaatgcaaaaaaaacaccaaaaaagtaAAGTATGTATACTggtaatatttatttctttcatactctatacatttacaaaaaaatgggaAATGCATAACCTCCCAGCCAACTTCCTATTTGAGCAGATGAACAAATGCAATATGCATTATTTGTGTACGAAAATAGAGCACTGTGTGAAATGCTGAACTGATTTGTGTGAGGAATCAGTTGAAGAAATCATAAATGTACTTTGATTTTAATTCACGTTTTTGCATCAACTTTTAGACATGTGATTTTAGATGTCCCCATaatttgttcctttttttaaataaatggtgAAACG

Function

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04662 BMP4; bone morphogenetic protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650364.1 lncRNA upstream 38874 26508611 ~ 26565844 (+) False LOC111193231
XR_002650366.1 lncRNA upstream 91196 26508611 ~ 26513522 (+) False LOC111193231
XR_002650365.1 lncRNA upstream 93619 26508611 ~ 26511099 (+) False LOC111193231
XR_002650367.1 lncRNA upstream 95399 26507339 ~ 26509319 (+) True LOC111193231
TU112730 lncRNA upstream 181657 26422514 ~ 26423061 (+) True G83672
TU112852 lncRNA downstream 105214 26718978 ~ 26719365 (+) True G83760
TU112851 lncRNA downstream 105871 26719635 ~ 26723005 (+) True G83759
TU112853 lncRNA downstream 110575 26724339 ~ 26724613 (+) True G83761
XR_002650368.1 lncRNA downstream 291117 26904881 ~ 26924218 (+) True LOC111193232
TU112888 lncRNA downstream 433782 27047546 ~ 27054268 (+) True G83785
XM_022673062.1 mRNA upstream 98206 26488033 ~ 26506512 (+) True snx14
XM_022673064.1 mRNA upstream 98206 26488034 ~ 26506512 (+) False snx14
XM_022673063.1 mRNA upstream 98206 26488034 ~ 26506512 (+) False snx14
XM_022673065.1 mRNA upstream 98206 26488035 ~ 26506512 (+) False snx14
XM_007257420.3 mRNA upstream 120096 26474776 ~ 26484622 (+) False LOC103026145
XM_007257406.3 mRNA downstream 79654 26693418 ~ 26716015 (+) True LOC103023862
XM_007257407.3 mRNA downstream 79659 26693423 ~ 26716015 (+) False LOC103023862
XM_022672485.1 mRNA downstream 114154 26727918 ~ 26777488 (+) True fermt2
XM_022673069.1 mRNA downstream 182044 26795808 ~ 26897068 (+) True stxbp6
XM_007257394.3 mRNA downstream 814988 27428752 ~ 27506291 (+) True c9h15orf41
trnay-gua_9 other upstream 96593 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 205451 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 355622 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 632475 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1570597 25030037 ~ 25034121 (+) False c9h8orf74
TU112857 other downstream 114059 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 114144 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1202041 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 2356500 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 2356515 28970279 ~ 28970839 (+) False LOC107197841

Expression Profile