RNA id: TU103798


Basic Information

Item Value
RNA id TU103798
length 789
lncRNA type read_through
GC content 0.41
exon number 2
gene id G76976
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 238265 ~ 358113 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcggaggaaagcgcagcgactcggttctgatacatcagctcacagacgcagccttgtgctgatccacatcaccctaggagtgatgaggagaaagagagagcgccatctactgtactgtacccacccagagagagcaagaccaaccaattgtgctctctcagggctccagcagctgatgtcaagctgcatgactgggattcgaaccggcgatcttctgatcatagtggcagcactttataCTGCTAGAACCTTAAAATGCCCACAGTAAGAAAAGGAAATAAGAATGAGCTGTTCACtgagtttatctgattttaattttggatttggtatcaatattcagaCATAGATCTGGGCTCTCATGGGTTAAACTTCTGGGTAATTAAGTGATGAAGATGTTAGAGCAGATAAATCACTGGATTGTGCTGAACACCAACCATAAATCACTGGAATTGATTACCCCCTTCTCTAGACAACAAGCCAGACCCTAATATGAAGTTGTTTTTTGGATTGTCCTATAATTTCCCAACTTTAACTCATATAATctagtattttaattagttttggTGATCAAATATGCGTTAACTTTTGTGAATGGTCTCAAAACGCTTCCAAATAATGtgacaatatatggacatactTTTATCAGCTACTCTTAACAACTGTTGGTTCTGCTGGACCAGTGAAATACGGACTACATAAACATGCTGTTGTGACCGGTGTTGTAAACAGTCTCTGTGATTCATGCTGATTTCATTTGTATTCCAGCAGCAGttctgaaaaagaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103839 lncRNA upstream 49955 252010 ~ 252531 (+) True G77008
TU103820 lncRNA upstream 70364 222531 ~ 232122 (+) False G76995
TU103821 lncRNA upstream 70364 230277 ~ 232122 (+) False G76995
TU103823 lncRNA upstream 70364 230277 ~ 232122 (+) True G76995
TU103826 lncRNA upstream 70364 230277 ~ 232122 (+) False G76995
TU103864 lncRNA downstream 24932 383045 ~ 383284 (+) True G77033
TU103868 lncRNA downstream 49870 407983 ~ 501997 (+) False G77035
TU103875 lncRNA downstream 64963 423076 ~ 482930 (+) True G77041
TU103886 lncRNA downstream 99790 457903 ~ 467900 (+) True G77049
TU103883 lncRNA downstream 101155 459268 ~ 465132 (+) True G77048
XM_022672524.1 mRNA upstream 113352 178406 ~ 189134 (+) True degs2
XM_007237180.3 mRNA upstream 113352 181291 ~ 189134 (+) False degs2
XM_022672523.1 mRNA upstream 128617 163028 ~ 173869 (+) True tpp1
XM_022672521.1 mRNA upstream 169183 84719 ~ 133303 (+) True ldah
XM_022672520.1 mRNA upstream 226601 52801 ~ 75885 (+) True apob
XM_022672539.1 mRNA downstream 1023 359136 ~ 369003 (+) True LOC103044274
XM_022672545.1 mRNA downstream 112400 470513 ~ 495668 (+) False itpka
XM_022672546.1 mRNA downstream 113341 471454 ~ 495668 (+) True itpka
XM_015607316.2 mRNA downstream 288786 646899 ~ 651689 (+) True LOC103041189
XM_007255077.3 mRNA downstream 303426 661539 ~ 666304 (+) True adprhl2
TU103782 other upstream 169326 106902 ~ 133160 (+) False ldah
TU103781 other upstream 169326 126248 ~ 133160 (+) False ldah
TU103777 other upstream 187123 84729 ~ 115363 (+) False ldah
TU103901 other downstream 161520 519633 ~ 520590 (+) True G77059
TU104033 other downstream 273601 631714 ~ 632372 (+) True G77154
TU104123 other downstream 647016 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 1126557 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1335243 1693356 ~ 1696981 (+) True G77471

Expression Profile