RNA id: TU103839


Basic Information

Item Value
RNA id TU103839
length 450
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G77008
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 252010 ~ 252531 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGTGTTTATGGGTCGAGgctggaggaggaggggaaCTGTAAGGCTGTAATGCTCAGTCCCTCGTTtcccttttttatattaaacagtgGAAGAGTTGATTcacagagagcacagagagcacagagagcacagagagcacagagagcaCAGCGCTGCATTAATAAcacctccctcctctctctaaactcaactcaaccgcagatcattaaaaatataaaacaagttAAAACATGTGTGACCCGGAGCATCATCTGTCCTGATCCTGTAATCCTGTAATCGTAAGGGTCAGTCTATACTCCAGCTCTGATCATCTTTAATTATTGatcaacagaaaataaaaacagagatgTTTGAGAAGTTTGAGCTCGTCCAGCCTCGtcctgtaataataataataaatctctGCATCACTTTACTCACCAGCGCTGAACACAGGCTCCCTCTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103820 lncRNA upstream 19888 222531 ~ 232122 (+) False G76995
TU103821 lncRNA upstream 19888 230277 ~ 232122 (+) False G76995
TU103823 lncRNA upstream 19888 230277 ~ 232122 (+) True G76995
TU103826 lncRNA upstream 19888 230277 ~ 232122 (+) False G76995
TU103816 lncRNA upstream 48418 197871 ~ 203592 (+) True G76992
TU103798 lncRNA downstream 49955 302486 ~ 358113 (+) True G76976
TU103864 lncRNA downstream 130514 383045 ~ 383284 (+) True G77033
TU103868 lncRNA downstream 155452 407983 ~ 501997 (+) False G77035
TU103875 lncRNA downstream 170545 423076 ~ 482930 (+) True G77041
TU103886 lncRNA downstream 205372 457903 ~ 467900 (+) True G77049
XM_022672524.1 mRNA upstream 62876 178406 ~ 189134 (+) True degs2
XM_007237180.3 mRNA upstream 62876 181291 ~ 189134 (+) False degs2
XM_022672523.1 mRNA upstream 78141 163028 ~ 173869 (+) True tpp1
XM_022672521.1 mRNA upstream 118707 84719 ~ 133303 (+) True ldah
XM_022672520.1 mRNA upstream 176125 52801 ~ 75885 (+) True apob
XM_007237193.2 mRNA downstream 68776 321307 ~ 337947 (+) True disp2
XM_007237198.3 mRNA downstream 99622 352153 ~ 354980 (+) True ccdc32
XM_022672539.1 mRNA downstream 106605 359136 ~ 369003 (+) True LOC103044274
XM_022672545.1 mRNA downstream 217982 470513 ~ 495668 (+) False itpka
XM_022672546.1 mRNA downstream 218923 471454 ~ 495668 (+) True itpka
TU103782 other upstream 118850 106902 ~ 133160 (+) False ldah
TU103781 other upstream 118850 126248 ~ 133160 (+) False ldah
TU103777 other upstream 136647 84729 ~ 115363 (+) False ldah
TU103901 other downstream 267102 519633 ~ 520590 (+) True G77059
TU104033 other downstream 379183 631714 ~ 632372 (+) True G77154
TU104123 other downstream 752598 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 1232139 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1440825 1693356 ~ 1696981 (+) True G77471

Expression Profile