RNA id: TU103867


Basic Information

Item Value
RNA id TU103867
length 841
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G77035
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 407983 ~ 501997 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgttttattatataaactacagacaacatttctcccaaataaaaaaaaaataaaaaattaagagcatttatttgcagaaaatctaattagaaatcaatatttggtggaataaccctggttggcatcatgttctcctccgtcagtcttacacactgcttttggataactttatgctgatttactcctggtgcaaatattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcaatcaaagaaactcataacagtcagatttcagtctgattaatatttgatgtaaatgcatgtggttTAAATCTTACTATACAATCCAGATACTtatcaaatgaaataaagtccaggtgtgaacagggtctgagtttctgtggtgttcagCATTAAGTGTAAGGCTATGTTCAGATTTGTTTCTTAAAtcagatgagatgagatgagtgtACACACTGTAATTTGGTAGTAATtgatcagattggatttgtTTGGCTTTTCTGTACAATCTTATTTTTGATGATCTGTATATTTACTGATTATAATCTCATTTCAAACCACTTCCAAATCTGGTTTAGATCAAAAATCAGTACAGATACAGTTCAGATGTATACAATTCAGATTTGGGCCGACAGTCTGAACATAGCCGAAGGTTCTGGGAagagatttttatatttatctgtaTTTCTATCAAAGTATTTTTCAAATCGGACAAATTTTGAATGTTGAAACACTATGATTTCAGGGATCTGGTGAAAGTATTTCTTGTCAcagaatgtaaatattttaaactttctcataaaaatcatgaaaaatgaAACATTGCTTTCTGTTTTATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103875 lncRNA upstream 18195 423076 ~ 482930 (+) True G77041
TU103886 lncRNA upstream 33225 457903 ~ 467900 (+) True G77049
TU103883 lncRNA upstream 35993 459268 ~ 465132 (+) True G77048
TU103864 lncRNA upstream 117841 383045 ~ 383284 (+) True G77033
TU103797 lncRNA upstream 143012 238265 ~ 358113 (+) False G76976
TU103896 lncRNA downstream 14629 516626 ~ 529843 (+) True G77054
TU103902 lncRNA downstream 20313 522310 ~ 534604 (+) True G77060
TU104011 lncRNA downstream 58906 560903 ~ 561171 (+) True G77135
TU104013 lncRNA downstream 64368 566365 ~ 566655 (+) True G77137
TU104026 lncRNA downstream 112014 614011 ~ 621295 (+) True G77148
XM_022672545.1 mRNA upstream 5457 470513 ~ 495668 (+) False itpka
XM_022672546.1 mRNA upstream 5457 471454 ~ 495668 (+) True itpka
XM_022672539.1 mRNA upstream 132122 359136 ~ 369003 (+) True LOC103044274
XM_007237198.3 mRNA upstream 146145 352153 ~ 354980 (+) True ccdc32
XM_007237193.2 mRNA upstream 163178 321307 ~ 337947 (+) True disp2
XM_015607316.2 mRNA downstream 144902 646899 ~ 651689 (+) True LOC103041189
XM_007255077.3 mRNA downstream 159542 661539 ~ 666304 (+) True adprhl2
XM_007255075.3 mRNA downstream 165208 667205 ~ 671575 (+) True cinp
XM_022672550.1 mRNA downstream 252242 754239 ~ 761723 (+) True nubpl
XM_022672551.1 mRNA downstream 252460 754457 ~ 761723 (+) False nubpl
TU103782 other upstream 367965 106902 ~ 133160 (+) False ldah
TU103781 other upstream 367965 126248 ~ 133160 (+) False ldah
TU103777 other upstream 385762 84729 ~ 115363 (+) False ldah
TU103901 other downstream 17636 519633 ~ 520590 (+) True G77059
TU104033 other downstream 129717 631714 ~ 632372 (+) True G77154
TU104123 other downstream 503132 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 982673 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1191359 1693356 ~ 1696981 (+) True G77471

Expression Profile