RNA id: TU103875


Basic Information

Item Value
RNA id TU103875
length 246
lncRNA type sense_over
GC content 0.53
exon number 2
gene id G77041
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 423076 ~ 482930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagtagcatcacagcgctaacgctcggaggaaagcacagcgactcggttctgatacatcagctcacagatgcagccttgtgctgatccacatcaccctaggagtgatgaggggaaagagagagcgccatctactgtactgtacccacccagagagagagagaccaactgtgctctctcggggctccatcagctgatgtcaagctgcatgaccaggattcaaaacCGATTGCTCAATCATAGTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103864 lncRNA upstream 39792 383045 ~ 383284 (+) True G77033
TU103797 lncRNA upstream 64963 238265 ~ 358113 (+) False G76976
TU103798 lncRNA upstream 64963 302486 ~ 358113 (+) True G76976
TU103839 lncRNA upstream 170545 252010 ~ 252531 (+) True G77008
TU103826 lncRNA upstream 190954 230277 ~ 232122 (+) False G76995
TU103866 lncRNA downstream 5827 488757 ~ 501997 (+) True G77035
TU103867 lncRNA downstream 18195 501125 ~ 501997 (+) False G77035
TU103896 lncRNA downstream 33696 516626 ~ 529843 (+) True G77054
TU103902 lncRNA downstream 39380 522310 ~ 534604 (+) True G77060
TU104011 lncRNA downstream 77973 560903 ~ 561171 (+) True G77135
XM_022672539.1 mRNA upstream 54073 359136 ~ 369003 (+) True LOC103044274
XM_007237198.3 mRNA upstream 68096 352153 ~ 354980 (+) True ccdc32
XM_007237193.2 mRNA upstream 85129 321307 ~ 337947 (+) True disp2
XM_022672524.1 mRNA upstream 233942 178406 ~ 189134 (+) True degs2
XM_015607316.2 mRNA downstream 163969 646899 ~ 651689 (+) True LOC103041189
XM_007255077.3 mRNA downstream 178609 661539 ~ 666304 (+) True adprhl2
XM_007255075.3 mRNA downstream 184275 667205 ~ 671575 (+) True cinp
XM_022672550.1 mRNA downstream 271309 754239 ~ 761723 (+) True nubpl
XM_022672551.1 mRNA downstream 271527 754457 ~ 761723 (+) False nubpl
TU103782 other upstream 289916 106902 ~ 133160 (+) False ldah
TU103781 other upstream 289916 126248 ~ 133160 (+) False ldah
TU103777 other upstream 307713 84729 ~ 115363 (+) False ldah
TU103901 other downstream 36703 519633 ~ 520590 (+) True G77059
TU104033 other downstream 148784 631714 ~ 632372 (+) True G77154
TU104123 other downstream 522199 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 1001740 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1210426 1693356 ~ 1696981 (+) True G77471

Expression Profile