RNA id: TU103883


Basic Information

Item Value
RNA id TU103883
length 982
lncRNA type inter_gene
GC content 0.52
exon number 9
gene id G77048
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 459268 ~ 465132 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTAAATCTCATTTTATCAGATTATAGAGTAGTatcctgtatttaaggcattGAGGAGCAGCTTGGTTGAGGTTTTATTTGAACATGGAGTTGAAAGCTCTGCCGATGACCATCCTCCGGACCTCGCTGGTGCCGGCGCCGATCTCGTACAGCTTAGCGTCTCTGAGGAATCGGCCCATTGGGTAATCATTAATATAACCGTTTCCACCCAGGCACTGAATTCCGTCCAGGGCTACTTGAGTGGCGTTTTCAGCACAATAAAGGATTACTCCAGCACAGTCCTTGGCGCTGAAGTGGCCTTTGTCACAAGCGCGTGCGACGTTGTACACATACTGCCGGCAGGAGCTCAGCCGGGTGTACATATCAGCCATTTTTGCCTGCATCAGCTGGAACAGGCCGATCTTCTGCCCGAACGCTTCTCGAACGTGCAGGTAGGGAATAGCGTGGTCCAGCACAGCCTGCATAataccTATTGGTCCAGCTGAGAGCACCAGCCTCTCCAGGTCTAATCCACTCATCAGCACGTACACCCCCTCATTCCCAACTTATCCAGCTTCTGCGCTGTGCTAAATCCCGGCGTCCCCTTTTCCACGATGAAGGCAGAGATGCCTCGGGCTGCCGCCTCGGGGCTCGTCTTCGCATAAACGATGAGCACGTCGGCATCTGGTCCGTTCGTGATCCAGAACTTATTACCATTCAGCACATAGTGGTCACCCTCGTTCCTCGCCGTGAGCTTCATGGACACGACATCAGATCCAGAGTTGGGTTCACTCATGGCCAAAGCACCGACGTGTTCTCCTGTAATcaaCTTGGGCATGtacttctctttctgtttcgtGTTTCCATGTCGCACCAGCTGATTAATACAGAGATTAGAATGAGCTCCATAACTGAGAGCAATCGCCGCAGACGCCCGAGACATCTCCTCCATCACGATCACATGATCCAGATAGCCCAATCCCGTGCCTCCGTACTCCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103864 lncRNA upstream 75984 383045 ~ 383284 (+) True G77033
TU103797 lncRNA upstream 101155 238265 ~ 358113 (+) False G76976
TU103798 lncRNA upstream 101155 302486 ~ 358113 (+) True G76976
TU103839 lncRNA upstream 206737 252010 ~ 252531 (+) True G77008
TU103826 lncRNA upstream 227146 230277 ~ 232122 (+) False G76995
TU103869 lncRNA downstream 3246 468378 ~ 501997 (+) False G77035
TU103866 lncRNA downstream 23625 488757 ~ 501997 (+) True G77035
TU103867 lncRNA downstream 35993 501125 ~ 501997 (+) False G77035
TU103896 lncRNA downstream 51494 516626 ~ 529843 (+) True G77054
TU103902 lncRNA downstream 57178 522310 ~ 534604 (+) True G77060
XM_022672539.1 mRNA upstream 90265 359136 ~ 369003 (+) True LOC103044274
XM_007237198.3 mRNA upstream 104288 352153 ~ 354980 (+) True ccdc32
XM_007237193.2 mRNA upstream 121321 321307 ~ 337947 (+) True disp2
XM_022672524.1 mRNA upstream 270134 178406 ~ 189134 (+) True degs2
XM_022672545.1 mRNA downstream 5381 470513 ~ 495668 (+) False itpka
XM_022672546.1 mRNA downstream 6322 471454 ~ 495668 (+) True itpka
XM_015607316.2 mRNA downstream 181767 646899 ~ 651689 (+) True LOC103041189
XM_007255077.3 mRNA downstream 196407 661539 ~ 666304 (+) True adprhl2
XM_007255075.3 mRNA downstream 202073 667205 ~ 671575 (+) True cinp
TU103782 other upstream 326108 106902 ~ 133160 (+) False ldah
TU103781 other upstream 326108 126248 ~ 133160 (+) False ldah
TU103777 other upstream 343905 84729 ~ 115363 (+) False ldah
TU103901 other downstream 54501 519633 ~ 520590 (+) True G77059
TU104033 other downstream 166582 631714 ~ 632372 (+) True G77154
TU104123 other downstream 539997 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 1019538 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1228224 1693356 ~ 1696981 (+) True G77471

Expression Profile