RNA id: TU103901


Basic Information

Item Value
RNA id TU103901
length 896
RNA type TUCP
GC content 0.46
exon number 3
gene id G77059
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 519633 ~ 520590 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaatggtaaaacatTCATTTGGCACGTCCATCTGTGGTGCATTTTAACCACTGTCAGATAACGAACCACAAAAATATAGAATTAAAAGATAAGGTCActtgtttttaaagttaataCTTCAGCCATTCTTTAAATTTCCcaccaaaaattaaaaaaatagccaTAAAAAAATTAGGATCTCATCTGTATCTGACAGCACTCAGTCCTTCAGAAGAGTCAGTGTATAaggtgtacaggtgtgtacaggtcTCTATAGGTGTGTACCGgatgtgtacaggtgtgtacaggtgggcaaaggtgtgtacaggtgtataTGGGTGTGTACCCGattgtgtacaggtgtgttcaggtgtgttctGGTGTTTACAGGTGTATATGGGTGTATACCCgattgtgttcaggtgtgttcaggtgtgtacaggtgtgttcaggtgtgttcaggtgtgtacaggtgagtACTGGTCTCTATGGGTGTGTACAAtatgtgtacaggtgtgtgctggtctctataggtgtgtacaggtgagtACAGATGTgcacaggtgtgtacaggtgtataTGGGTGTGTACCCgattgtgttcaggtgtgttcaggtgtgtacaggtgtgtacaggtgtgtaccggatgtgtacaggtgtgtacaggtgtgtaaaggtgtgtaaaggtgtgttcaggtgtgtacaggtgtgttcaggtgtgtacaggtgtgtaccggatgtgtacatgtgtgtacaggtgtgtacaggtgtgtcaGAGGCGGTGGAAGGTGGAGTTGACACAGAGCTGTAAGAGTCTCTTACTGAGGGTGAGGCTGGCACAGGTGAGCACGATGCCCGTCACCACGGTGGACACCACCACCGccagaatcagagagagagacgggtgTCCCCCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103868 lncRNA upstream 17636 407983 ~ 501997 (+) False G77035
TU103869 lncRNA upstream 17636 468378 ~ 501997 (+) False G77035
TU103866 lncRNA upstream 17636 488757 ~ 501997 (+) True G77035
TU103867 lncRNA upstream 17636 501125 ~ 501997 (+) False G77035
TU103875 lncRNA upstream 36703 423076 ~ 482930 (+) True G77041
TU103902 lncRNA downstream 1720 522310 ~ 534604 (+) True G77060
TU104011 lncRNA downstream 40313 560903 ~ 561171 (+) True G77135
TU104013 lncRNA downstream 45775 566365 ~ 566655 (+) True G77137
TU104026 lncRNA downstream 93421 614011 ~ 621295 (+) True G77148
TU104035 lncRNA downstream 111124 631714 ~ 632372 (+) False G77154
XM_022672545.1 mRNA upstream 23965 470513 ~ 495668 (+) False itpka
XM_022672546.1 mRNA upstream 23965 471454 ~ 495668 (+) True itpka
XM_022672539.1 mRNA upstream 150630 359136 ~ 369003 (+) True LOC103044274
XM_007237198.3 mRNA upstream 164653 352153 ~ 354980 (+) True ccdc32
XM_007237193.2 mRNA upstream 181686 321307 ~ 337947 (+) True disp2
XM_015607316.2 mRNA downstream 126309 646899 ~ 651689 (+) True LOC103041189
XM_007255077.3 mRNA downstream 140949 661539 ~ 666304 (+) True adprhl2
XM_007255075.3 mRNA downstream 146615 667205 ~ 671575 (+) True cinp
XM_022672550.1 mRNA downstream 233649 754239 ~ 761723 (+) True nubpl
XM_022672551.1 mRNA downstream 233867 754457 ~ 761723 (+) False nubpl
TU103782 other upstream 386473 106902 ~ 133160 (+) False ldah
TU103781 other upstream 386473 126248 ~ 133160 (+) False ldah
TU103775 other upstream 404270 84729 ~ 115363 (+) False ldah
TU104033 other downstream 111124 631714 ~ 632372 (+) True G77154
TU104123 other downstream 484539 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 964080 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1172766 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 2379544 2900134 ~ 2978094 (+) True G77722

Expression Profile