RNA id: TU104026


Basic Information

Item Value
RNA id TU104026
length 442
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G77148
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 614011 ~ 621295 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggtttttaatcacagttttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttttgctgctttatccatcttcctcttgattatattccagagaggttttttttaagtgctctttaatttttatccagagctgtatttcacaGTCTAATTCTAGCTGGGTTTGAGTGGCGTATTGACGGCTGTGGATCAGATCCAGATCTCTAGAAGTGATGGGAGTTTCCAGCACGATGCCCAAGATGTCCAGATGTCCAGTTGTTCAGATGCTCATCCTTCGTCTCCTTCGTTTCTCTCCTCGTTTCCCGCTATGACGTGGAGCCTGCGGGCGCGGAGGGGTGGCAGCTGCTCGTAGGTGCTGAAGCCCAGCGGATTGTGCTGCTGGGGGAGGCGGTACAGCAGCAGATGGCTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104013 lncRNA upstream 47356 566365 ~ 566655 (+) True G77137
TU104011 lncRNA upstream 52840 560903 ~ 561171 (+) True G77135
TU103902 lncRNA upstream 79407 522310 ~ 534604 (+) True G77060
TU103896 lncRNA upstream 84168 516626 ~ 529843 (+) True G77054
TU103866 lncRNA upstream 112014 488757 ~ 501997 (+) True G77035
TU104035 lncRNA downstream 10419 631714 ~ 632372 (+) False G77154
TU104047 lncRNA downstream 36621 657916 ~ 660202 (+) True G77163
TU104054 lncRNA downstream 53581 674876 ~ 677225 (+) True G77166
TU104062 lncRNA downstream 77627 698922 ~ 760923 (+) True G77174
TU104096 lncRNA downstream 139119 760414 ~ 777173 (+) True G77191
XM_022672545.1 mRNA upstream 118343 470513 ~ 495668 (+) False itpka
XM_022672546.1 mRNA upstream 118343 471454 ~ 495668 (+) True itpka
XM_022672539.1 mRNA upstream 245008 359136 ~ 369003 (+) True LOC103044274
XM_007237198.3 mRNA upstream 259031 352153 ~ 354980 (+) True ccdc32
XM_007237193.2 mRNA upstream 276064 321307 ~ 337947 (+) True disp2
XM_015607316.2 mRNA downstream 25604 646899 ~ 651689 (+) True LOC103041189
XM_007255077.3 mRNA downstream 40244 661539 ~ 666304 (+) True adprhl2
XM_007255075.3 mRNA downstream 45910 667205 ~ 671575 (+) True cinp
XM_022672550.1 mRNA downstream 132944 754239 ~ 761723 (+) True nubpl
XM_022672551.1 mRNA downstream 133162 754457 ~ 761723 (+) False nubpl
TU103901 other upstream 93421 519633 ~ 520590 (+) True G77059
TU103782 other upstream 480851 106902 ~ 133160 (+) False ldah
TU103781 other upstream 480851 126248 ~ 133160 (+) False ldah
TU103778 other upstream 498648 84729 ~ 115363 (+) False ldah
TU104033 other downstream 10419 631714 ~ 632372 (+) True G77154
TU104123 other downstream 383834 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 863375 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 1072061 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 2278839 2900134 ~ 2978094 (+) True G77722

Expression Profile