RNA id: TU104078


Basic Information

Item Value
RNA id TU104078
length 1817
lncRNA type read_through
GC content 0.36
exon number 2
gene id G77181
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 786239 ~ 894659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGCGGTCGAACTGATGCGACTGTCGGCGCAGATATGCAGTTCTTTAGAgacttgttttaaaaaatctattaaaaaaaatccagattttGAAAACGGCAACTAAAAATAATtctaaaagtaaaagaagaagaaaataaaataaaaaagatgaagCGACAATTCAGTTCTGCGTTTGTTAACGGGATGGTGAGCATGATGGATGGCGATGCAGATTTGACTGCAAATATATGCGGAAGATATATTTATACAGCCgttttttccttttccatttGTAAAgacaattgaattgaattgaactgtCAATCAGTCGCTGAGACGCAAACACACTACGCTACACGATGCACGATcgattttaactattttaactattttaacgGCTTAATCTTGTGCCATTTCTTTTTGAACTCCaccttttttcccctcttcttAATTATTTTGCGATGGactgtttgttttgttctttgttttattgttatttttttaagaaaaaaaaaagtaatttctaaaagAGAACTGAAACGCGAAAGCGGTGGTGTCCCGAGGTCATGTGATTATTTGGGACGACGGCACAGGTTAAAAAACTCTCGCGCACATAAGAAACATCCTGGGACAGGACACCAGCAGCAGGACTGAAGCCCACAGCCAcgccctctttctttctctctttctctttctcactctctttctctctctcgcactcagAAAGCCACAGAAGGGAAACAACCCACTGGAACTCTCTCTGGCACATCTCAGACAGCCAGGCTTTAGACTGTGGCCTGGCTGCAGTCTTTAACTCTGTTTCAGTCACCCTttgttatgttgttttttttttaaatgtttttatgttttatttctgctctgcctcttgaaaaatactgtatttttcgcactataaagcgcactgtattataaggcgaaTTTTATGCgatgtaaagctaagctaagttaagtttagtaaacaaaactgtaatttttaaaagttaaataagttCTCGATGTTAATCTAGaaagatttctctcttgaaaattgtttatttgggtgagtaaagtgcttctgtttatttacagtaagcttagatttccagatttccactaaggctcggtgcaacagcattagcattagcagctaaccattAGCGCTGCCCGACTGAGGACCCTGAGTGTTACAGTAAACCAGGACGATATTAGCTATCGGTTtgtcctacgtagcttgttttaacacaataaacacacagactacagttcgatatactcacctctgaacaaaagagctagcgcttagcgtggttagcggctaatgctaatactgctccagtctcagtgctggagaactaaactgaatctcctgtataactctgtacttcagtggagtgtctttactgatccttaatacctgactgatagaatttttTGGAAAACTATAGGATTtttggtgcgccttatattgcGAAAAGTACGTTAACTTGCACACCAACAGCAGACATCAAAAATAGTACAAATtctccatttctttctttctaaaaaactaaatttgcaTGTCTTTTGCCACTGGTAATAACTGAGCAGAAAGTAGAAAGGTTAAgtaaaggtttaaaaaagagaaaaatacataaaatacgtTTAAATACGTACAAGCTTGagtgagtgtttgtttttttatgcaagatttttaacaaaaacaaaaaaaacttgaggGAACATTAAATTGGGGTTAAACTGTGTATTagctcatttgttttttttgttttttattttatttaatagcgAATTGAATGAAGTAACATAACAAACTGAATGAAGCGATTTGAATACAACC

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104096 lncRNA upstream 38229 760414 ~ 777173 (+) True G77191
TU104062 lncRNA upstream 54479 698922 ~ 760923 (+) True G77174
TU104054 lncRNA upstream 138177 674876 ~ 677225 (+) True G77166
TU104047 lncRNA upstream 155200 657916 ~ 660202 (+) True G77163
TU104035 lncRNA upstream 183030 631714 ~ 632372 (+) False G77154
TU104106 lncRNA downstream 8379 903038 ~ 903239 (+) True G77200
TU104107 lncRNA downstream 8759 903418 ~ 903986 (+) True G77201
TU104109 lncRNA downstream 13147 907806 ~ 908179 (+) False G77203
TU104112 lncRNA downstream 13147 907806 ~ 908280 (+) True G77203
TU104110 lncRNA downstream 13286 907945 ~ 908179 (+) False G77203
XM_022672552.1 mRNA upstream 712 776124 ~ 814690 (+) True arhgap5
XM_022672554.1 mRNA upstream 731 776124 ~ 814671 (+) False arhgap5
XM_007255087.3 mRNA upstream 768 776124 ~ 814634 (+) False arhgap5
XM_022672550.1 mRNA upstream 53679 754239 ~ 761723 (+) True nubpl
XM_022672551.1 mRNA upstream 53679 754457 ~ 761723 (+) False nubpl
XM_022672449.1 mRNA downstream 121174 1015833 ~ 1033566 (+) True LOC103042422
XM_022672557.1 mRNA downstream 144215 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 144215 1038874 ~ 1179637 (+) False adam12
XM_022672559.1 mRNA downstream 292461 1187120 ~ 1203142 (+) True LOC103043042
XM_022672563.1 mRNA downstream 409408 1304067 ~ 1318118 (+) True LOC107197738
TU104033 other upstream 183030 631714 ~ 632372 (+) True G77154
TU103901 other upstream 294812 519633 ~ 520590 (+) True G77059
TU103782 other upstream 682242 106902 ~ 133160 (+) False ldah
TU103781 other upstream 682242 126248 ~ 133160 (+) False ldah
TU103780 other upstream 700039 84729 ~ 115363 (+) False ldah
TU104123 other downstream 110470 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 590011 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 798697 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 2005475 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 2005475 2900134 ~ 2978094 (+) False G77722

Expression Profile