RNA id: TU104079


Basic Information

Item Value
RNA id TU104079
length 1391
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G77181
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 786239 ~ 894659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaagctaagcgcttttgtttatttacagtaagcttagatttccagatctcctctaaggctgggtgcagcagcattagcattggtgGCTAACCACtggtgctagtaaatgccacccgacagcactacactgaggaaccgaTATTAGCCTAGCCAATATTACCTAGCGGTTCgtctcatgtagcttgtttgAACATgactctgaatggtgaaagagctagcgcttagtgtggttagcggctaatgctaatactgttccagtctctttgttggagaactaaactgaaactcctgtataactctgtacttcagtggagtgtctttactgcttcttaatacctgactgatagaatttttTGGAAAACTATAGGATTtttggtgcgccttatattgcGAAAAGTACGTTAACTTGCACACCAACAGCAGACATCAAAAATAGTACAAATtctccatttctttctttctaaaaaactaaatttgcaTGTCTTTTGCCACTGGTAATAACTGAGCAGAAAGTAGAAAGGTTAAgtaaaggtttaaaaaagagaaaaatacataaaatacgtTTAAATACGTACAAGCTTGagtgagtgtttgtttttttatgcaagatttttaacaaaaacaaaaaaaacttgaggGAACATTAAATTGGGGTTAAACTGTGTATTagctcatttgtttttttgttttttatcacgTCATACGTCAATTTTTAAAATATCGTATTTTTAATTTCGCTTCCCTGAATAgaggacaaatatataaataaatatatagatagatataaatatatatataaatgaatagaCTATATAAAAGTCAGCAGACGTTGCTGATGAATCGAGGGGTACTGGAGCTCTGTATAATCTTGTAAAACTTGTAATCAGAATTCTTTGTGGTATGCTGTACTAAAATTCGGGGTTAGATTAATTGACTATACTTTTAATtccctactgtttttttttttcggttgtttttttctgtttgttttatctgttttttcttttgtatacGGTACTGAATTTCGTTCCGCTGTAACAGATGCTGCTTTAGGAAGCTTACAGTCTTTGTGTGAAACTTTAGCCCGACACAGGGACGTGTAGAAGGGGAAGCGTGTAAAGGATGGTGAAAAGGATGGTCAGAGAAACGTTAGGGGTTTTCTTCTCAAAAGCTTTGTAAAACCAGATTTATATCTCAGTCAGATCAACTATAACAAGAGGAAAGGGCTCAAAATAGGTTTTGGGGGAAGCGCACAGCTGCTAGGATCCCATTCGTGTAGTTTTAGAAAGAGCAACATTTGTTCATAGACCTGCCTCATAAAAAAACTGAtgtacaaactgaaaaaaatttaACATCATCTGCTATGTAttatagtaaataaatgattttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104096 lncRNA upstream 29892 760414 ~ 777173 (+) True G77191
TU104062 lncRNA upstream 46142 698922 ~ 760923 (+) True G77174
TU104054 lncRNA upstream 129840 674876 ~ 677225 (+) True G77166
TU104047 lncRNA upstream 146863 657916 ~ 660202 (+) True G77163
TU104035 lncRNA upstream 174693 631714 ~ 632372 (+) False G77154
TU104106 lncRNA downstream 85188 903038 ~ 903239 (+) True G77200
TU104107 lncRNA downstream 85568 903418 ~ 903986 (+) True G77201
TU104109 lncRNA downstream 89956 907806 ~ 908179 (+) False G77203
TU104112 lncRNA downstream 89956 907806 ~ 908280 (+) True G77203
TU104110 lncRNA downstream 90095 907945 ~ 908179 (+) False G77203
XM_022672550.1 mRNA upstream 45342 754239 ~ 761723 (+) True nubpl
XM_022672551.1 mRNA upstream 45342 754457 ~ 761723 (+) False nubpl
XM_007255075.3 mRNA upstream 135490 667205 ~ 671575 (+) True cinp
XM_007255077.3 mRNA upstream 140761 661539 ~ 666304 (+) True adprhl2
XM_015607316.2 mRNA upstream 155376 646899 ~ 651689 (+) True LOC103041189
XM_007255088.3 mRNA downstream 17127 834977 ~ 838153 (+) True eef1akmt2
XM_022672556.1 mRNA downstream 65447 883297 ~ 933983 (+) False LOC103037215
XM_022672449.1 mRNA downstream 197983 1015833 ~ 1033566 (+) True LOC103042422
XM_022672557.1 mRNA downstream 221024 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 221024 1038874 ~ 1179637 (+) False adam12
TU104033 other upstream 174693 631714 ~ 632372 (+) True G77154
TU103901 other upstream 286475 519633 ~ 520590 (+) True G77059
TU103782 other upstream 673905 106902 ~ 133160 (+) False ldah
TU103781 other upstream 673905 126248 ~ 133160 (+) False ldah
TU103780 other upstream 691702 84729 ~ 115363 (+) False ldah
TU104123 other downstream 187279 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 666820 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 875506 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 2082284 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 2082284 2900134 ~ 2978094 (+) False G77722

Expression Profile