RNA id: TU104082


Basic Information

Item Value
RNA id TU104082
length 1122
lncRNA type sense_over
GC content 0.34
exon number 3
gene id G77181
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 786239 ~ 894659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttagcggctaatgctaatactgcttcagtctcggtgctggagaattaaactgaaactcctgtataactctgtacttcagtggagtggctttactgctccttaatacctgactgatttttTGGAAAACTATAGGATTtttggtgcgccttatattgcGAAAAGTACGTTAACTTGCACACCAACAGCAGACATCAAAAATAGTACAAATtctccatttctttctttctaaaaaactaaatttgcaTGTCTTTTGCCACTGGTAATAACTGAGCAGAAAGTAGAAAGGTTAAgtaaaggtttaaaaaagagaaaaatacataaaatacgtTTAAATACGTACAAGCTTGagtgagtgtttgtttttttatgcaagatttttaacaaaaacaaaaaaaacttgaggGAACATTAAATTGGGGTTAAACTGTGTATTagctcatttgtttttttgttttttatcacgTCATACGTCAATTTTTAAAATATCGTATTTTTAATTTCGCTTCCCTGAATAgaggacaaatatataaataaatatatagatagatataaatatatatataaatgaatagaCTATATAAAAGTCAGCAGACGTTGCTGATGAATCGAGGGGTACTGGAGCTCTGTATAATCTTGTAAAACTTGTAATCAGAATTCTTTGTGGTATGCTGTACTAAAATTCGGGGTTAGATTAATTGACTATACTTTTAATtccctactgtttttttttttcggttgtttttttctgtttgttttatctgttttttcttttgtatacGGTACTGAATTTCGTTCCGCTGTAACAGATGCTGCTTTAGGAAGCTTACAGTCTTTGTGTGAAACTTTAGCCCGACACAGGGACGTGTAGAAGGGGAAGCGTGTAAAGGATGGTGAAAAGGATGGTCAGAGAAACGTTAGGGGTTTTCTTCTCAAAAGCTTTGTAAAACCAGATTTATATCTCAGTCAGATCAACTATAACAAGAGGAAAGGGCTCAAAATAGGTTTTGGGGGAAGCGCACAGCTGCTAGGATCCCATTCGTGTAGTTTTAGAAAGAGCAACATTTGTTCATAGACCTGCCTCATAAAAAAACTGAtgtacaaactgaaaaaaatttaACATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104096 lncRNA upstream 9066 760414 ~ 777173 (+) True G77191
TU104062 lncRNA upstream 25316 698922 ~ 760923 (+) True G77174
TU104054 lncRNA upstream 109014 674876 ~ 677225 (+) True G77166
TU104047 lncRNA upstream 126037 657916 ~ 660202 (+) True G77163
TU104035 lncRNA upstream 153867 631714 ~ 632372 (+) False G77154
TU104106 lncRNA downstream 85223 903038 ~ 903239 (+) True G77200
TU104107 lncRNA downstream 85603 903418 ~ 903986 (+) True G77201
TU104109 lncRNA downstream 89991 907806 ~ 908179 (+) False G77203
TU104112 lncRNA downstream 89991 907806 ~ 908280 (+) True G77203
TU104110 lncRNA downstream 90130 907945 ~ 908179 (+) False G77203
XM_022672550.1 mRNA upstream 24516 754239 ~ 761723 (+) True nubpl
XM_022672551.1 mRNA upstream 24516 754457 ~ 761723 (+) False nubpl
XM_007255075.3 mRNA upstream 114664 667205 ~ 671575 (+) True cinp
XM_007255077.3 mRNA upstream 119935 661539 ~ 666304 (+) True adprhl2
XM_015607316.2 mRNA upstream 134550 646899 ~ 651689 (+) True LOC103041189
XM_007255088.3 mRNA downstream 17162 834977 ~ 838153 (+) True eef1akmt2
XM_022672556.1 mRNA downstream 65482 883297 ~ 933983 (+) False LOC103037215
XM_022672449.1 mRNA downstream 198018 1015833 ~ 1033566 (+) True LOC103042422
XM_022672557.1 mRNA downstream 221059 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 221059 1038874 ~ 1179637 (+) False adam12
TU104033 other upstream 153867 631714 ~ 632372 (+) True G77154
TU103901 other upstream 265649 519633 ~ 520590 (+) True G77059
TU103782 other upstream 653079 106902 ~ 133160 (+) False ldah
TU103781 other upstream 653079 126248 ~ 133160 (+) False ldah
TU103780 other upstream 670876 84729 ~ 115363 (+) False ldah
TU104123 other downstream 187314 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 666855 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 875541 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 2082319 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 2082319 2900134 ~ 2978094 (+) False G77722

Expression Profile