RNA id: TU104096


Basic Information

Item Value
RNA id TU104096
length 220
lncRNA type read_through
GC content 0.36
exon number 2
gene id G77191
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 760414 ~ 777173 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgagtttctttaattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacaagatgccaagatgcatgaaaaaaattaaaaaccagggttattccaccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104054 lncRNA upstream 83189 674876 ~ 677225 (+) True G77166
TU104047 lncRNA upstream 100212 657916 ~ 660202 (+) True G77163
TU104035 lncRNA upstream 128042 631714 ~ 632372 (+) False G77154
TU104026 lncRNA upstream 139119 614011 ~ 621295 (+) True G77148
TU104013 lncRNA upstream 193759 566365 ~ 566655 (+) True G77137
TU104082 lncRNA downstream 9066 786239 ~ 817815 (+) False G77181
TU104079 lncRNA downstream 29892 807065 ~ 817850 (+) False G77181
TU104083 lncRNA downstream 37896 815069 ~ 844096 (+) False G77181
TU104078 lncRNA downstream 38229 815402 ~ 894659 (+) True G77181
TU104106 lncRNA downstream 125865 903038 ~ 903239 (+) True G77200
XM_007255075.3 mRNA upstream 88839 667205 ~ 671575 (+) True cinp
XM_007255077.3 mRNA upstream 94110 661539 ~ 666304 (+) True adprhl2
XM_015607316.2 mRNA upstream 108725 646899 ~ 651689 (+) True LOC103041189
XM_022672545.1 mRNA upstream 264746 470513 ~ 495668 (+) False itpka
XM_007255088.3 mRNA downstream 57804 834977 ~ 838153 (+) True eef1akmt2
XM_022672556.1 mRNA downstream 106124 883297 ~ 933983 (+) False LOC103037215
XM_022672449.1 mRNA downstream 238660 1015833 ~ 1033566 (+) True LOC103042422
XM_022672557.1 mRNA downstream 261701 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 261701 1038874 ~ 1179637 (+) False adam12
TU104033 other upstream 128042 631714 ~ 632372 (+) True G77154
TU103901 other upstream 239824 519633 ~ 520590 (+) True G77059
TU103782 other upstream 627254 106902 ~ 133160 (+) False ldah
TU103781 other upstream 627254 126248 ~ 133160 (+) False ldah
TU103780 other upstream 645051 84729 ~ 115363 (+) False ldah
TU104123 other downstream 227956 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 707497 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 916183 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 2122961 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 2122961 2900134 ~ 2978094 (+) False G77722

Expression Profile