RNA id: XM_022672556.1


Basic Information

Item Value
RNA id XM_022672556.1
length 2504
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC103037215
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 883297 ~ 935678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagaggctCACGCGTACTGTGCCTATACTCTCTGTGTGGGATAGCTTCCTTTCCTGGACCTTTCTGGAGGAATTTAAGCACTTCTTACTTCCCTCAGGCTCCTTCAACTCGTAGACGCGGTGGTTGCGTGTCTGCCTGCGTGTGCCAACGTGTGCCTGCGTGTGTCTGCGTGTGCTTGCTTCGTCTGCACAGCCGGTTGGGAAGCGCATGGCTCTGTTCCCCTCGCCTCCCGACAGCGATACGATAAAGCAAACGGCAATGCCTCAGCGCCACGCCGCCTCGCTCGCgctcctgctgctgatgctcCTCTCCTCAGGGAGTGATGGTCAGTAAGGAGGCAGGCCGCTGTGCCCTGTCGAACTCGGAGTCGGACTCGGAGAGCGGCGGTCCGACCCTGGGAGCGGAGGGCGGCGGGCGCGGGGACGCCGTACGCAAGCGGAACAAAGCCTTGCAGGTTCGCTTCAAGGACATCTGCGAGGCCCAGAATGAGGCGGCTCGTCTAGCCAGAGGTGCGAAGGGACGCTCGGTTTCCTGCAAGGTCGTGCACAGGAGGTACATGACCATGCCGGCGCGACGCTCCATCCCCAACGTGACCAAGAGCACGGCGGTGCAGACCTCGCCGGACCTGAAGAAGCGCTACCAGACGTTCCCCTTCGAGCGGAAAAAGGGGCACACCATCAAACACACGGCTCTGGTGGAGAACTACCAGGGCCAGAACAACGGCTTCTTGAGTGACGTGAAGAGTCCCGAGGAGGAACAGCCTTGTGGCGGCAGGGTGCAGAAGACTCGGGTACTTTTGCACAGCATGCCGCCGTGCAGCGACGTGCAAGACTTGTGCGCTGGTGCTGGAGATTGCATAGATTCTGACCTTTGTGCCGATCCCACGGATCGAAGTAGGGACTCAACCGCAAACTCTGACCAGACGGATTTGAGAAAAGACGGAAGATTTCAAGGGACCAGAGAGTCAGAAAGTCAAGAACCCAACTGCACCCAGAGCTCCACCTCGCCACCTCCTCCAACGCAGCAACCTCTGCAGGACAGAGGCGGCAGTTTGAAGGTGACCGGTCCAATCGCGTGGACGTCTCTGACGCAGGTGGAATGTCTTGAAAGCCCCTCGGTGAGGTGCAAGCGTAAGAAAGAATCCGCACAGTTTAACGGCCTTCAGTCGCAGACTCTACCTCACCCGCCTCGCTGTTCATCACAGGAAACCTCCCAGGCTCACTTCCACGGCAGCCACGGCTTCACGAGCCGGGTAGCCGAAGAGACTGCGGCAGCAGGGCTGGGGTGCGGAGAGGTGATCCCTCTACCTGGGGTCGAAGGGGACGTAAAAGCTCGACTTCAGGCCATGGAGACTCTAATCAGCTCCAGCCAGGAGACCATTAAagtggcactcactcctgttactgaaaatgagggagaggatgaggaagaACGATTGTCATACCGGACCGGGCAGGATACAACCAACTGTGACACTTGCCGGAACAGTGCCTGCATCATCTACAGTGTGGAGCTGGACTTTAAGCTGCAGGAGGATAAACTCCAGCCGCTGATGAAAAGACTGTGTCCGACGCTGGACCCGCCCTACCCGTCTCTGCCTTACCCCCACGAGGTGATCACCTCCACCCCCAAGCGCAAGTCCAAGAGCGAGGCCAAGAAACTCGCCCGCTGGAAGCTCTGGTTCCTCTGACCCACTCGGACCTTCAGAACTGCTTTCTTGGATCCGGTATCCCTGAACCATCAGGACCATCAGGACCATCAGGACCATCAGGCCACGAGAACACTCAGACCCGATCTGTCCGGTTCTGCTCTGATGAACGCAGGCCATGGGAATGATTTGTGATTGTAGCAGCGGGGGCTGCTGTCAGCCGTGGGATTTTAACAAGGAATAACATTCGTTTTTATTCTGTAATCTTTGATTAAACCTGAGGAACTGCTGAGAATTCATCTGCTGTCATGTTTACCAAAACAGGATTGCATATAAAATCTCCAAATATGGTTAATTACCAAGGGTCCCGTAGAGCGGAACAGAAGCTTCAAAGCTAAAAGCTCGTTCACCACAGCGCAGATTCAGAAATGCACCATCAGAGGCATCTAATCAGCAAAGCACAAActttgggaaatatatataaaaaaacggacattttcatttcaaatcttctctttctgtttgattttctttatttgttcttgTATTGCAAATGATTTGCCCCTTATTGTTTGCAGAAAACGAGGATTTGAAGGGAATTTGAAATGAAACTGAATGATGGTGATAAGTGTTGAGTTGTTGGAAGACTGGAAGTGATTGTGTGTGAATGCAGAATCTATTGACTGCATGAACGACAGCTGAAGACtatagagaaatatatagagattttttcttttaaatatggAAGAAAAAACCATTAAGAGTCATTAACAGTCAGTAGTCTGTAAGATGCTGTGAACTAAATAGTAATTTTtcaattaaaattacacattgaAAGTGTTTTctctattaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104083 lncRNA upstream 39201 815069 ~ 844096 (+) False G77181
TU104079 lncRNA upstream 65447 807065 ~ 817850 (+) False G77181
TU104082 lncRNA upstream 65482 786239 ~ 817815 (+) False G77181
TU104096 lncRNA upstream 106124 760414 ~ 777173 (+) True G77191
TU104062 lncRNA upstream 122374 698922 ~ 760923 (+) True G77174
TU104104 lncRNA downstream 2265 936248 ~ 937233 (+) True G77198
TU104126 lncRNA downstream 31831 965814 ~ 1050942 (+) True G77214
TU104129 lncRNA downstream 36568 970551 ~ 977452 (+) True G77215
TU104164 lncRNA downstream 304361 1238344 ~ 1238806 (+) True G77245
TU104180 lncRNA downstream 331854 1265837 ~ 1266074 (+) True G77259
XM_007255088.3 mRNA upstream 45144 834977 ~ 838153 (+) True eef1akmt2
XM_022672552.1 mRNA upstream 68607 776124 ~ 814690 (+) True arhgap5
XM_022672554.1 mRNA upstream 68626 776124 ~ 814671 (+) False arhgap5
XM_007255087.3 mRNA upstream 68663 776124 ~ 814634 (+) False arhgap5
XM_022672550.1 mRNA upstream 121574 754239 ~ 761723 (+) True nubpl
XM_022672449.1 mRNA downstream 81850 1015833 ~ 1033566 (+) True LOC103042422
XM_022672557.1 mRNA downstream 104891 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 104891 1038874 ~ 1179637 (+) False adam12
XM_022672559.1 mRNA downstream 253137 1187120 ~ 1203142 (+) True LOC103043042
XM_022672563.1 mRNA downstream 370084 1304067 ~ 1318118 (+) True LOC107197738
TU104033 other upstream 250925 631714 ~ 632372 (+) True G77154
TU103901 other upstream 362707 519633 ~ 520590 (+) True G77059
TU103782 other upstream 750137 106902 ~ 133160 (+) False ldah
TU103781 other upstream 750137 126248 ~ 133160 (+) False ldah
TU103780 other upstream 767934 84729 ~ 115363 (+) False ldah
TU104123 other downstream 71146 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 550687 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 759373 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1966151 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1966151 2900134 ~ 2978094 (+) False G77722

Expression Profile