RNA id: TU104104


Basic Information

Item Value
RNA id TU104104
length 986
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G77198
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 936248 ~ 937233 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTCTTTTTCAGGAGTTCCTacaatgtagattaatattaaaacagttCCAATCCATATTTTTGCAAGAACTACTCTAACTAGGTAAAAGAAATTATGAAGGtcagtcattttttttcattaggatgaaactggcactcatcaggattgcTCCAGGAAAGTAAAAGCGAGAGTTATCTCTATTGtattgtacaggataagtttattagagttatcagcctcagaaatccCCAAAGTTCCCCaaataagagcatctaaatactGCACATTTTTcaggtatttttatttgtttaacacttttaagttactacatcaTTTGTATGTGATCTATATTAATGTCAATATATCCCAATACATTATAGCCTATtgcataaattatataatttaataaaataatagcaatatatataaatatttcaccTACCCTAATATGAAGAGTTACCATTTCCGAACAATGACTGGTTCTTTAAATAATCACGTTTAAAGGCTTTTTAAAGGTTTTGCACCAATTAAACATTATGACTCAAACTGTAAAAGCAAAGCAAGAAAATCAAGAACCATTTAGGATCCCGTACTTTAAAgagtgcactgcaaaaaaacatacaaaaaaaaaaacatacatacaagctagatgaacttaaaaaaaaaaaaaatcatgcattTAGTTTAGAATTAGAGTGGAGTTGCACAGTGTGGACGAGCTGTTACTGTAGCATAACGAAACACAGATGCATCGCTATACCTTTGGGAAAGTGCAATTGATTTATATTGtgcaatatattacattttgtaCTCTTTCTATCCaccgaaaaaataaaaaaataaaaacaatgcatttaCAATAAAGACACGACTGTGTTGTAATGGAATCAGTGTGTTCTGTTATTTGGAGGTGTATGAGGGAAGCTGTGGGTTGTTTGGGGTAAAGTAGATCACAGCTCAGCGCAGGATGATTGAATAGTGCCTGAGAAACGGGACTCAGCTGTGG

Function

GO:

id name namespace
GO:0007610 behavior biological_process
GO:0050795 regulation of behavior biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104103 lncRNA upstream 570 918337 ~ 935678 (+) True LOC103037215
TU104116 lncRNA upstream 22588 913108 ~ 913660 (+) True G77207
TU104112 lncRNA upstream 27968 907806 ~ 908280 (+) True G77203
TU104111 lncRNA upstream 27968 907945 ~ 908280 (+) False G77203
TU104109 lncRNA upstream 28069 907806 ~ 908179 (+) False G77203
TU104126 lncRNA downstream 28581 965814 ~ 1050942 (+) True G77214
TU104129 lncRNA downstream 33318 970551 ~ 977452 (+) True G77215
TU104164 lncRNA downstream 301111 1238344 ~ 1238806 (+) True G77245
TU104180 lncRNA downstream 328604 1265837 ~ 1266074 (+) True G77259
TU104327 lncRNA downstream 406863 1344096 ~ 1345264 (+) True G77375
XM_022672556.1 mRNA upstream 2265 883297 ~ 933983 (+) False LOC103037215
XM_007255088.3 mRNA upstream 98095 834977 ~ 838153 (+) True eef1akmt2
XM_022672552.1 mRNA upstream 121558 776124 ~ 814690 (+) True arhgap5
XM_022672554.1 mRNA upstream 121577 776124 ~ 814671 (+) False arhgap5
XM_007255087.3 mRNA upstream 121614 776124 ~ 814634 (+) False arhgap5
XM_022672449.1 mRNA downstream 78600 1015833 ~ 1033566 (+) True LOC103042422
XM_022672557.1 mRNA downstream 101641 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 101641 1038874 ~ 1179637 (+) False adam12
XM_022672559.1 mRNA downstream 249887 1187120 ~ 1203142 (+) True LOC103043042
XM_022672563.1 mRNA downstream 366834 1304067 ~ 1318118 (+) True LOC107197738
TU104033 other upstream 303876 631714 ~ 632372 (+) True G77154
TU103901 other upstream 415658 519633 ~ 520590 (+) True G77059
TU103782 other upstream 803088 106902 ~ 133160 (+) False ldah
TU103781 other upstream 803088 126248 ~ 133160 (+) False ldah
TU103780 other upstream 820885 84729 ~ 115363 (+) False ldah
TU104123 other downstream 67896 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 547437 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 756123 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1962901 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1962901 2900134 ~ 2978094 (+) False G77722

Expression Profile