RNA id: TU104112


Basic Information

Item Value
RNA id TU104112
length 475
lncRNA type intronic
GC content 0.38
exon number 1
gene id G77203
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 907806 ~ 908280 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gactgatatttacattgtagattctcactgaagcatcaaaactatgaatgaacacatgtggagttttatgtacttaacaaaaaaggtgaaataactgaaaaaacatgttttatattcttctgtttcttcaaaataaaagcccccctttgctctgattactgctttgcacacacttggcatcattctctcaatgagcttcttcaagaggtggccacctgaaataaaaaaagttttccaacagtcttgaaggaaggaaggagttcccagaggtgtttattagcacttgttgctcctttgtcttcttcactctgtgctccagctcaccccaaacctggatctggattgggttcaggtccggtgactgtggaggttcagctcattttttattaagtacataaaactccacatgtgttcattcatagttttgatgcttcagtgagaatctacaatgtaaatatcagtcatgaaaataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104107 lncRNA upstream 3820 903418 ~ 903986 (+) True G77201
TU104106 lncRNA upstream 4567 903038 ~ 903239 (+) True G77200
TU104078 lncRNA upstream 13147 815402 ~ 894659 (+) True G77181
TU104083 lncRNA upstream 63710 815069 ~ 844096 (+) False G77181
TU104079 lncRNA upstream 89956 807065 ~ 817850 (+) False G77181
TU104116 lncRNA downstream 4828 913108 ~ 913660 (+) True G77207
TU104103 lncRNA downstream 10057 918337 ~ 935678 (+) True LOC103037215
TU104104 lncRNA downstream 27968 936248 ~ 937233 (+) True G77198
TU104126 lncRNA downstream 57534 965814 ~ 1050942 (+) True G77214
TU104129 lncRNA downstream 62271 970551 ~ 977452 (+) True G77215
XM_007255088.3 mRNA upstream 69653 834977 ~ 838153 (+) True eef1akmt2
XM_022672552.1 mRNA upstream 93116 776124 ~ 814690 (+) True arhgap5
XM_022672554.1 mRNA upstream 93135 776124 ~ 814671 (+) False arhgap5
XM_007255087.3 mRNA upstream 93172 776124 ~ 814634 (+) False arhgap5
XM_022672551.1 mRNA upstream 146083 754457 ~ 761723 (+) False nubpl
XM_022672449.1 mRNA downstream 107553 1015833 ~ 1033566 (+) True LOC103042422
XM_022672557.1 mRNA downstream 130594 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 130594 1038874 ~ 1179637 (+) False adam12
XM_022672559.1 mRNA downstream 278840 1187120 ~ 1203142 (+) True LOC103043042
XM_022672563.1 mRNA downstream 395787 1304067 ~ 1318118 (+) True LOC107197738
TU104033 other upstream 275434 631714 ~ 632372 (+) True G77154
TU103901 other upstream 387216 519633 ~ 520590 (+) True G77059
TU103782 other upstream 774646 106902 ~ 133160 (+) False ldah
TU103781 other upstream 774646 126248 ~ 133160 (+) False ldah
TU103780 other upstream 792443 84729 ~ 115363 (+) False ldah
TU104123 other downstream 96849 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 576390 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 785076 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1991854 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1991854 2900134 ~ 2978094 (+) False G77722

Expression Profile