RNA id: TU104116


Basic Information

Item Value
RNA id TU104116
length 553
lncRNA type intronic
GC content 0.39
exon number 1
gene id G77207
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 913108 ~ 913660 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acatctccataaaagttgttttcagcagagggaagctgtaagatatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccaacagatgacagacatgactctccaaacaaaccatcactgattggtggaaacttcactctagaccttgagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttactttaaatgaaatgtaaaatttactgatcatcagtgatggtttggagatttttacttttatctatTGTTTTACctagaactgttctaaacaactaaacacctatctatctctattgtacttggctggtggtgtttttcctccatagactaattctaaccatttgtttcttagctctgaattactgggtaaagtatataaacactgatgtgttattcgcacaaataacacaggaatgaactgcatgctgttcctagcgctgttagttatctcctatctgacgagacggcgtcgccgcccggcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104112 lncRNA upstream 4828 907806 ~ 908280 (+) True G77203
TU104111 lncRNA upstream 4828 907945 ~ 908280 (+) False G77203
TU104109 lncRNA upstream 4929 907806 ~ 908179 (+) False G77203
TU104110 lncRNA upstream 4929 907945 ~ 908179 (+) False G77203
TU104107 lncRNA upstream 9122 903418 ~ 903986 (+) True G77201
TU104103 lncRNA downstream 4677 918337 ~ 935678 (+) True LOC103037215
TU104104 lncRNA downstream 22588 936248 ~ 937233 (+) True G77198
TU104126 lncRNA downstream 52154 965814 ~ 1050942 (+) True G77214
TU104129 lncRNA downstream 56891 970551 ~ 977452 (+) True G77215
TU104164 lncRNA downstream 324684 1238344 ~ 1238806 (+) True G77245
XM_007255088.3 mRNA upstream 74955 834977 ~ 838153 (+) True eef1akmt2
XM_022672552.1 mRNA upstream 98418 776124 ~ 814690 (+) True arhgap5
XM_022672554.1 mRNA upstream 98437 776124 ~ 814671 (+) False arhgap5
XM_007255087.3 mRNA upstream 98474 776124 ~ 814634 (+) False arhgap5
XM_022672551.1 mRNA upstream 151385 754457 ~ 761723 (+) False nubpl
XM_022672449.1 mRNA downstream 102173 1015833 ~ 1033566 (+) True LOC103042422
XM_022672557.1 mRNA downstream 125214 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 125214 1038874 ~ 1179637 (+) False adam12
XM_022672559.1 mRNA downstream 273460 1187120 ~ 1203142 (+) True LOC103043042
XM_022672563.1 mRNA downstream 390407 1304067 ~ 1318118 (+) True LOC107197738
TU104033 other upstream 280736 631714 ~ 632372 (+) True G77154
TU103901 other upstream 392518 519633 ~ 520590 (+) True G77059
TU103782 other upstream 779948 106902 ~ 133160 (+) False ldah
TU103781 other upstream 779948 126248 ~ 133160 (+) False ldah
TU103780 other upstream 797745 84729 ~ 115363 (+) False ldah
TU104123 other downstream 91469 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 571010 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 779696 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1986474 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1986474 2900134 ~ 2978094 (+) False G77722

Expression Profile