RNA id: TU104123


Basic Information

Item Value
RNA id TU104123
length 535
RNA type TUCP
GC content 0.44
exon number 2
gene id G77212
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1005129 ~ 1008842 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatatatatacaggggttggacaatgaaactgaaacacctgtcatcattttagtgtgggattttaggtttcatggctaaattggagcagcctggtgttcaatcttcattaattgcacattattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctctaaatattgcaatgcacacaacattatgggagacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcataccaccaagaagcaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacatgaaaccacggctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccactaTCAATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104129 lncRNA upstream 27677 970551 ~ 977452 (+) True G77215
TU104104 lncRNA upstream 67896 936248 ~ 937233 (+) True G77198
TU104103 lncRNA upstream 69451 918337 ~ 935678 (+) True LOC103037215
TU104116 lncRNA upstream 91469 913108 ~ 913660 (+) True G77207
TU104112 lncRNA upstream 96849 907806 ~ 908280 (+) True G77203
TU104164 lncRNA downstream 229502 1238344 ~ 1238806 (+) True G77245
TU104180 lncRNA downstream 256995 1265837 ~ 1266074 (+) True G77259
TU104327 lncRNA downstream 335254 1344096 ~ 1345264 (+) True G77375
TU104329 lncRNA downstream 336501 1345343 ~ 1346504 (+) False G77376
TU104328 lncRNA downstream 336632 1345474 ~ 1349654 (+) True G77376
XM_022672556.1 mRNA upstream 71146 883297 ~ 933983 (+) False LOC103037215
XM_007255088.3 mRNA upstream 166976 834977 ~ 838153 (+) True eef1akmt2
XM_022672552.1 mRNA upstream 190439 776124 ~ 814690 (+) True arhgap5
XM_022672554.1 mRNA upstream 190458 776124 ~ 814671 (+) False arhgap5
XM_007255087.3 mRNA upstream 190495 776124 ~ 814634 (+) False arhgap5
XM_022672449.1 mRNA downstream 6991 1015833 ~ 1033566 (+) True LOC103042422
XM_022672557.1 mRNA downstream 30032 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 30032 1038874 ~ 1179637 (+) False adam12
XM_022672559.1 mRNA downstream 178278 1187120 ~ 1203142 (+) True LOC103043042
XM_022672563.1 mRNA downstream 295225 1304067 ~ 1318118 (+) True LOC107197738
TU104033 other upstream 372757 631714 ~ 632372 (+) True G77154
TU103901 other upstream 484539 519633 ~ 520590 (+) True G77059
TU103782 other upstream 871969 106902 ~ 133160 (+) False ldah
TU103781 other upstream 871969 126248 ~ 133160 (+) False ldah
TU103778 other upstream 889766 84729 ~ 115363 (+) False ldah
TU104376 other downstream 475828 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 684514 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1891292 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1891292 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 2407326 3416168 ~ 3416240 (+) True trnav-aac_2

Expression Profile