RNA id: TU104129


Basic Information

Item Value
RNA id TU104129
length 202
lncRNA type inter_gene
GC content 0.28
exon number 2
gene id G77215
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 970551 ~ 977452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacttcagtttctgaatcagtttctctgattttgttatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaatattctcatttagagcatttatttacagaaaatgagaaatgacaaataacaaaaaaagatgcagagctttcagacctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104104 lncRNA upstream 33318 936248 ~ 937233 (+) True G77198
TU104103 lncRNA upstream 34873 918337 ~ 935678 (+) True LOC103037215
TU104116 lncRNA upstream 56891 913108 ~ 913660 (+) True G77207
TU104111 lncRNA upstream 62271 907945 ~ 908280 (+) False G77203
TU104110 lncRNA upstream 62372 907945 ~ 908179 (+) False G77203
TU104164 lncRNA downstream 260892 1238344 ~ 1238806 (+) True G77245
TU104180 lncRNA downstream 288385 1265837 ~ 1266074 (+) True G77259
TU104327 lncRNA downstream 366644 1344096 ~ 1345264 (+) True G77375
TU104329 lncRNA downstream 367891 1345343 ~ 1346504 (+) False G77376
TU104328 lncRNA downstream 368022 1345474 ~ 1349654 (+) True G77376
XM_022672556.1 mRNA upstream 36568 883297 ~ 933983 (+) False LOC103037215
XM_007255088.3 mRNA upstream 132398 834977 ~ 838153 (+) True eef1akmt2
XM_022672552.1 mRNA upstream 155861 776124 ~ 814690 (+) True arhgap5
XM_022672449.1 mRNA downstream 38381 1015833 ~ 1033566 (+) True LOC103042422
XM_022672557.1 mRNA downstream 61422 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA downstream 61422 1038874 ~ 1179637 (+) False adam12
XM_022672559.1 mRNA downstream 209668 1187120 ~ 1203142 (+) True LOC103043042
XM_022672563.1 mRNA downstream 326615 1304067 ~ 1318118 (+) True LOC107197738
TU104033 other upstream 338179 631714 ~ 632372 (+) True G77154
TU103901 other upstream 449961 519633 ~ 520590 (+) True G77059
TU103782 other upstream 837391 106902 ~ 133160 (+) False ldah
TU103781 other upstream 837391 126248 ~ 133160 (+) False ldah
TU103780 other upstream 855188 84729 ~ 115363 (+) False ldah
TU104123 other downstream 27677 1005129 ~ 1008842 (+) True G77212
TU104376 other downstream 507218 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 715904 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1922682 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1922682 2900134 ~ 2978094 (+) False G77722

Expression Profile