RNA id: TU104164


Basic Information

Item Value
RNA id TU104164
length 332
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G77245
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1238344 ~ 1238806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccaaattgaaaatctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaccaaactgaactgcttgaatttttacaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaactctaaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaatataaacctataaatagcaaaatcagagaaactgattcagaa

Function

GO: NA

KEGG:

id description
ko00670 One carbon pool by folate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104126 lncRNA upstream 187402 965814 ~ 1050942 (+) True G77214
TU104129 lncRNA upstream 260892 970551 ~ 977452 (+) True G77215
TU104104 lncRNA upstream 301111 936248 ~ 937233 (+) True G77198
TU104103 lncRNA upstream 302666 918337 ~ 935678 (+) True LOC103037215
TU104116 lncRNA upstream 324684 913108 ~ 913660 (+) True G77207
TU104180 lncRNA downstream 27031 1265837 ~ 1266074 (+) True G77259
TU104327 lncRNA downstream 105290 1344096 ~ 1345264 (+) True G77375
TU104329 lncRNA downstream 106537 1345343 ~ 1346504 (+) False G77376
TU104328 lncRNA downstream 106668 1345474 ~ 1349654 (+) True G77376
TU104330 lncRNA downstream 108429 1347235 ~ 1349654 (+) False G77376
XM_022672559.1 mRNA upstream 35202 1187120 ~ 1203142 (+) True LOC103043042
XM_022672557.1 mRNA upstream 58707 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA upstream 58707 1038874 ~ 1179637 (+) False adam12
XM_022672449.1 mRNA upstream 204778 1015833 ~ 1033566 (+) True LOC103042422
XM_022672556.1 mRNA upstream 304361 883297 ~ 933983 (+) False LOC103037215
XM_022672563.1 mRNA downstream 65261 1304067 ~ 1318118 (+) True LOC107197738
XM_022672564.1 mRNA downstream 80613 1319419 ~ 1329088 (+) True gcfc2
XM_022672570.1 mRNA downstream 231209 1470015 ~ 1479658 (+) True LOC103037734
XM_022672569.1 mRNA downstream 231213 1470019 ~ 1479658 (+) False LOC103037734
XM_022672573.1 mRNA downstream 259316 1498122 ~ 1514730 (+) True mthfd1
TU104123 other upstream 229502 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 605972 631714 ~ 632372 (+) True G77154
TU103901 other upstream 717754 519633 ~ 520590 (+) True G77059
TU103782 other upstream 1105184 106902 ~ 133160 (+) False ldah
TU103781 other upstream 1105184 126248 ~ 133160 (+) False ldah
TU104376 other downstream 245864 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 454550 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1661328 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1661328 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 2177362 3416168 ~ 3416240 (+) True trnav-aac_2

Expression Profile