RNA id: TU104180


Basic Information

Item Value
RNA id TU104180
length 238
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G77259
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1265837 ~ 1266074 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaatcaatatttggtggaataaccctggtttttatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104164 lncRNA upstream 27031 1238344 ~ 1238806 (+) True G77245
TU104126 lncRNA upstream 214895 965814 ~ 1050942 (+) True G77214
TU104129 lncRNA upstream 288385 970551 ~ 977452 (+) True G77215
TU104104 lncRNA upstream 328604 936248 ~ 937233 (+) True G77198
TU104103 lncRNA upstream 330159 918337 ~ 935678 (+) True LOC103037215
TU104327 lncRNA downstream 78022 1344096 ~ 1345264 (+) True G77375
TU104329 lncRNA downstream 79269 1345343 ~ 1346504 (+) False G77376
TU104328 lncRNA downstream 79400 1345474 ~ 1349654 (+) True G77376
TU104330 lncRNA downstream 81161 1347235 ~ 1349654 (+) False G77376
TU104325 lncRNA downstream 102028 1368102 ~ 1368585 (+) True G77373
XM_022672559.1 mRNA upstream 62695 1187120 ~ 1203142 (+) True LOC103043042
XM_022672557.1 mRNA upstream 86200 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA upstream 86200 1038874 ~ 1179637 (+) False adam12
XM_022672449.1 mRNA upstream 232271 1015833 ~ 1033566 (+) True LOC103042422
XM_022672556.1 mRNA upstream 331854 883297 ~ 933983 (+) False LOC103037215
XM_022672563.1 mRNA downstream 37993 1304067 ~ 1318118 (+) True LOC107197738
XM_022672564.1 mRNA downstream 53345 1319419 ~ 1329088 (+) True gcfc2
XM_022672570.1 mRNA downstream 203941 1470015 ~ 1479658 (+) True LOC103037734
XM_022672569.1 mRNA downstream 203945 1470019 ~ 1479658 (+) False LOC103037734
XM_022672573.1 mRNA downstream 232048 1498122 ~ 1514730 (+) True mthfd1
TU104123 other upstream 256995 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 633465 631714 ~ 632372 (+) True G77154
TU103901 other upstream 745247 519633 ~ 520590 (+) True G77059
TU103782 other upstream 1132677 106902 ~ 133160 (+) False ldah
TU104376 other downstream 218596 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 427282 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1634060 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1634060 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 2150094 3416168 ~ 3416240 (+) True trnav-aac_2

Expression Profile