RNA id: TU104327


Basic Information

Item Value
RNA id TU104327
length 1169
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G77375
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1344096 ~ 1345264 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCGTATACAAGCAAAATTAcaagcaaaaaaatcagatttcagtctacTTCTAAAGAAGCAGAGCACTACACCCACACGACTCATCCACGTGAGCTCACTGTTGTCTCATTTCCTTTAATTCCTTTCGTCACAATAAAAATAGCCACTAACAAAGACTTCATTTggattacagtatttacagaagCAGACAAAAGAATCAGTTCACTCCTTCACCTCATATTGGCTCTTGTTCCAACCCCAGGAATGCACAAAAACATGGGCCTATTGCTGTCGTTAACTTTACTGAGGTATAGAGGCTACTTCAAAGTATTAGTAGACACGATCAGTTAATAAAAGGTACGATCTTCACGATCATAAACCCCTCAGGAGGAGCATTATTAATTGTtcaaaaaaagtgcacaagatcCATTGACCGGAAGAACGCATCAGCAAACGCACACCATCCTCTAAATTCAGTAGAATCCATGATGAGTTTCCACAGATTCCAGTGACTCTTATTCCGGACAGTCAGCAGTCCGTTCGTGTCCGTGTATGCTCGAGTTTCAGGTGTGGATATGGTCCCTGAGGGGATATCATGGAAGTGAAAGtcagtttttattgtattgagTTATGTGCATGAGTTTTTATAGAGTCCTGATGCAGTATTAGCAGGTTTGCTTGCCAGTCCACAGTCAAATTGTGTGCCGTTATAgtttacatatacagtacccACAATGCCATCCATTATGTACCACTACATCATTACAGCTAATAACGCTCATTATATTTGCAGGTGCcggaaaaaaacacagcaataaCATTACTGTTGGGTTTTGTACGCTAAGTACACATACAGCAGATAAAGCAAACACAGctgttgcataaaaaaaaaaatgtgaggaaaaaaaataaatctgtaaaaaaaaggcaaGAAAATGTACTTCAGATCACAGCTTGTAACCATCTATCCCTTACTGCatattctaatttctaatatatatattatatcattctcaacataaagaaaaaaaatgtctttttgagtttaatttttttaataattttggttCCTTCTATCTTTATATTATCTTTTATCACTTATTAATTTGGCTTGGAAAAGGGGGaagggagaggcagcagacagagaaGGAGGGGCAACAGACAaagggggagaggcagcagatagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104180 lncRNA upstream 78022 1265837 ~ 1266074 (+) True G77259
TU104164 lncRNA upstream 105290 1238344 ~ 1238806 (+) True G77245
TU104126 lncRNA upstream 293154 965814 ~ 1050942 (+) True G77214
TU104129 lncRNA upstream 366644 970551 ~ 977452 (+) True G77215
TU104104 lncRNA upstream 406863 936248 ~ 937233 (+) True G77198
TU104329 lncRNA downstream 79 1345343 ~ 1346504 (+) False G77376
TU104328 lncRNA downstream 210 1345474 ~ 1349654 (+) True G77376
TU104330 lncRNA downstream 1971 1347235 ~ 1349654 (+) False G77376
TU104325 lncRNA downstream 22838 1368102 ~ 1368585 (+) True G77373
TU104361 lncRNA downstream 103560 1448824 ~ 1452208 (+) True G77399
XM_022672564.1 mRNA upstream 15008 1319419 ~ 1329088 (+) True gcfc2
XM_022672563.1 mRNA upstream 25978 1304067 ~ 1318118 (+) True LOC107197738
XM_022672559.1 mRNA upstream 140954 1187120 ~ 1203142 (+) True LOC103043042
XM_022672557.1 mRNA upstream 164459 1038874 ~ 1179637 (+) True adam12
XM_022672558.1 mRNA upstream 164459 1038874 ~ 1179637 (+) False adam12
XM_022672570.1 mRNA downstream 124751 1470015 ~ 1479658 (+) True LOC103037734
XM_022672569.1 mRNA downstream 124755 1470019 ~ 1479658 (+) False LOC103037734
XM_022672573.1 mRNA downstream 152858 1498122 ~ 1514730 (+) True mthfd1
XM_022672574.1 mRNA downstream 183706 1528970 ~ 1563180 (+) True c9h15orf52
XM_022672575.1 mRNA downstream 187026 1532290 ~ 1563180 (+) False c9h15orf52
TU104123 other upstream 335254 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 711724 631714 ~ 632372 (+) True G77154
TU103901 other upstream 823506 519633 ~ 520590 (+) True G77059
TU103782 other upstream 1210936 106902 ~ 133160 (+) False ldah
TU104376 other downstream 139406 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 348092 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1554870 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1554870 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 2070904 3416168 ~ 3416240 (+) True trnav-aac_2

Expression Profile