RNA id: TU104330


Basic Information

Item Value
RNA id TU104330
length 2420
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G77376
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1345343 ~ 1349654 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aattttttggaaCTTTACCCCATTTTTCCCCAAATTTGGAAGGCTAGAAATGaatagtggctaatgctaatgctccagccttagtgctggagaaatctggaaatctaatcttaccGTATATAAATGAAAGCGCTTTACTCCCCAAATTAGATTTTCTGAAATTAGAAATCTGTTAAGATAAACATTCAGCGCTTgtctgactttaaaataaaatgttttttaaggaataccagttttgtttacttagcttggcgtttacattttttgtgtacatttagCTTGACAGTATTAATCTGACATCATTTTAGCCTGATAATGTGAACGCAGCCTTTGAAAGACTATATTGCTGACCTTATGCATCCCCAATGCTGAATTAAAGCTGTTCTAAAATggttcctaataaagtgctgTGTAAGTGCAGCTATGCTTACAGTCGACAGCCTGAGTAGGTACTGAGGttcaaacacaaatacagtggAGTTTTAGAACATGATTCTCTTAATGTAGATCTCAAAACTGCACCTGGAAGATGAGCTATACTCTCAATATTTGGAAGAATTAAGAATTTAGAGCGATGCGTTTTAAATATGGCTGTCAGGATCGTCTTCCCCTGAGAGACTTGGTTAAACACAGTGATTGCAGAGACATCGACTGTGTCAATTCCGATTATTGGAGCACATTAAAAGCTAATTTAGTGCAGCAGGGCCATAGGAAGAATTATTAAGAGATAAAGTAGAACACTCTGCCTCTTAGGTTCACACATTCGCAGAAAAACCCTGCCACTGGACGTAGACTTGTGGCCAGGGTTTTGTCCTATtgatcaaaaaaataaaaaatatctataaatgACTATATCATTATTACTTATCACAGGGCAAGATTAAGGGTTGATAACTCTTCCTGTTGTTCCTGTAGGTGTTTTCCTGCTAAAGCACTCCTGATTCAACTCATTCACAGACTTTCAGGTTTTCCTGATTCCCGATTTACAGTGGTTCCCAAAACGGGACCTGGAGGACACCTTACTCTTACATTTTAGTGATTCCTGCTATTTTTAGTACAGTGTAACCTGGTTCACTTGCACCCTTGGTCCGATTTGTTTGGAcaggtgtgaatacagtaatcacactctgatCAAAAACGCCAATagctggatacccctctcaagagtgcatTTTTTAGCCAATACATGATGCATTTTGttggaaaacaaacaataaacgtctattttctgatcttttttcattcaaaattccaatcagatttttaggcgtatattttttaagtcaaacgagcgctaaATGTTGATCTAcacaaaaactgtttatttgggtgagtaaaacgcttctgtttatttacagtaagctaagatttgcagatttccaccAAGGCTAGCCAGACAGccagaggaaccctgagtgttacgGGAACCcaaggcgatattagctagcggttcgtcccatgtagcttgtgataacaacagtaaatgagaAGGCAGCTATAGTCTGGTCTACTCGCCTTTGAATAGAGAAAAATCTTCCTAGCACTTAGCACATTTAGCGGgtattgctaatgctgctccagcagtgcttgttAGGAGTTAggaacaggctacaggccgataatactctaTACTTcagtctttactgctccttaatatctgactggtagaattcatacataaggagcaccggattataaggagctctgatgatttttttggaaaattaaaggattttaagtgcagcttatagtgcgaaaatgtGCGTTAGGAGCcaggaaacacaaaaatattCAAGATTGGGGGAGTTTCAGGACCAGGGTGGGGAACCACTGTACTAAAAGTCATAAATCACCTAATCCTGCtgaactcactcactctcagtTTCCCAATTCCAGCTATTtaactgagaaaaagagaaacctTCTTATAGCACCATCAATCATCAGCAATCAAGACAAACAGGTTGTAGCAGTGATCAAATTTAGTACAgctagatatatatatatataactggcTGGATGGGTTTGCACCTTTGCTTACGATATATCTGGAGGACTTTCACTTATACTCACTTgcaatagcagcagcagcagcttattTTTCCTCAAATGTGTGAACgcagcagcacacacactgTGGATCACACACTCCATGTTTAACATTTCACAGACATTTTACACCGTCCTCATATTCTGTTTCACTCTGATTCTGCAAAGTcagttcttcttcttttttcaccATTAAAGTGACGGTTCAACCCTACCAACAGAGGCCGACACCATAAAGCTATGACGAGTACTTCTACTAAAGCTGTGAGACGCTTCTCACAGGGATGGAAGGGTTCCATATGGCTCTAATCATTTAATCACAGTCTCAGATCCAGGCTATTGACCACAGGGGAGGGGAGCAGCAGCAGtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104329 lncRNA upstream 731 1345343 ~ 1346504 (+) False G77376
TU104327 lncRNA upstream 1971 1344096 ~ 1345264 (+) True G77375
TU104180 lncRNA upstream 81161 1265837 ~ 1266074 (+) True G77259
TU104164 lncRNA upstream 108429 1238344 ~ 1238806 (+) True G77245
TU104126 lncRNA upstream 296293 965814 ~ 1050942 (+) True G77214
TU104325 lncRNA downstream 18448 1368102 ~ 1368585 (+) True G77373
TU104361 lncRNA downstream 99170 1448824 ~ 1452208 (+) True G77399
TU104365 lncRNA downstream 113584 1463238 ~ 1464202 (+) True G77402
TU104366 lncRNA downstream 115252 1464906 ~ 1465270 (+) True G77403
TU104374 lncRNA downstream 131167 1480821 ~ 1483275 (+) True G77408
XM_022672564.1 mRNA upstream 18147 1319419 ~ 1329088 (+) True gcfc2
XM_022672563.1 mRNA upstream 29117 1304067 ~ 1318118 (+) True LOC107197738
XM_022672559.1 mRNA upstream 144093 1187120 ~ 1203142 (+) True LOC103043042
XM_022672557.1 mRNA upstream 167598 1038874 ~ 1179637 (+) True adam12
XM_022672570.1 mRNA downstream 120361 1470015 ~ 1479658 (+) True LOC103037734
XM_022672569.1 mRNA downstream 120365 1470019 ~ 1479658 (+) False LOC103037734
XM_022672573.1 mRNA downstream 148468 1498122 ~ 1514730 (+) True mthfd1
XM_022672574.1 mRNA downstream 179316 1528970 ~ 1563180 (+) True c9h15orf52
XM_022672575.1 mRNA downstream 182636 1532290 ~ 1563180 (+) False c9h15orf52
TU104123 other upstream 338393 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 714863 631714 ~ 632372 (+) True G77154
TU103901 other upstream 826645 519633 ~ 520590 (+) True G77059
TU103782 other upstream 1214075 106902 ~ 133160 (+) False ldah
TU104376 other downstream 135016 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 343702 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1550480 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1550480 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 2066514 3416168 ~ 3416240 (+) True trnav-aac_2

Expression Profile