RNA id: TU104361


Basic Information

Item Value
RNA id TU104361
length 2726
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G77399
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1448824 ~ 1452208 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttgtagTCTCATAGTTAAGGTATGCCTCAACTTGCAAGACAACTGTTGGCAGTATGTACAACATACCTGTAATTTCCATGGAATGGAATAAAAAGCAATATCTATTTCATACACACTATCTCTGAAGAGAGAAACTTTCCCTAGACAGGCAAAGATTTTTCCAGGGAAGGTTATGCGGTTGAGACGATTACATTTAAAGAGTATACAGTGCCGTGTACTACATACCAAAATGGACATACTTACCTGTaattgagaaaataaaataactgcaTTTGAACTGCACTGTGTAACATTCAATTGAAATTCCTGCAGGGAATATTACCTGTATTAAATATTGTCCTCGTTTGGCGCAGCAaatcagaaagaaaaaataaaagtcccaaaACTATGACGTGAGGATGCGTAAAAGTAGAGGCCATCTAATTCCACTTACAATCTCAGGCAAAACAACAAACTACACAATAACAGAACGCAGCCCCAACgttacaattaaataaacatttttgcaacaaacatttttccaaaaaaggGGAGAACTTCAGTCTTCTATACCAGTGAAGTGGGTCTCACAGCCACATACCCTCTTTTTTATAAAAGCACCATCTTTTTTGTGGAAAAGTACAAATCTTACAAAggtaaactatttttaatgacTGTTTTCTCCTCCTGACGTCTCCAAACAGGCTCATTCGGGAGAGAACAATAAGAGGGCTGTATCTTGTAGCTTAATGTATGTAATTTGTGCACGACTAACTGAGGAGGCTATAAAAGGTTTCTGCAGTCTTTGACTGTCGAGCTGCCACTCTTTGGAGGGGAATGTGGCTGGGCTTGATCCGTGTGCGGAGTGGCATCAGCGCTGGGAGGGTGAAAGGCAGGAAACTTCAGAGAGCCTTTCTCTGGATCCTCCTCCCAAGACTCTGAACACacgaaaaagaggaagaagagagggAAGGACGGGTtgtggagggagagagagagagaaggagaggaggaggaggatggagcTGAGAGTCTGAACCGAGGTTTCCCCACTGCTGGGAAGCGTGAGCTGGATCTAGCTGGGCTCCACGCGGAACTTTTTCTTCGTAGGCGGTTCCTCAGGCTCCGACTCTGAGCTGGTGTCAGAGCCTCCGTCGAAGGCTGAGACGGCGCTGCCCTTAGGGTTGGTGTACAAGCTGCTGTCCGAGGAGTAGCTGGCCTGGAGCTGCGCGTTCCCCTTGGCCTTTTCCAGAGCGCGGACTTGCTGTTCCAGGAGCGCGTTCTGTTTCTTCAGGTCATCAATGTCCTGCTGGTGTGTGTGGTTCTTTCGGCGCATGTATTGGATGTACTCTGTGGCTTTGTCTAGAATCTGAGCTCGGGAAGCCTGTTTAACAGAGTGCTGTCAGCAAAGAATCACTACTAAACCATGACGCAATGTTTGGTGACACAACATATACAACACTTAACAAGAAACACCATCAACAGTCCTCTAGTTACAGCTAATATGTTGCTCTTGAATTATTTCCTCATAGGTACAGTACAAATAAAAAGCTGGTATAtagaaatatatcatataaataaatattacagacTACTGCATAGAGTCAATaagcaaaatttactttatttactctatttgtaaaaaaatatttacgaTCTGAGGAATATTCTAAAGAACCTGatctaaaacaaactgaacaaaCTGAGATCAAACAACTGAATCAAACAGTACTGCAAACGCTATTACAAATAttgccatatttttcacactacaaggcGCAacggataataataataggcggataatgctaatgatgctccagcagtgctagccggggataGCAGCTGGCTAAAGGCCattaatactcatctctgaacaggtcgatattagctagcagttcgtcctgcgaagcttgttttaatacggtAAATGCACACAGGCTACGGTCCGATATACtttagttagcggctaatgctaatgctgctcctgtCTCGAGTGccagagaactaaactgaaactcctgtataactctgtacttcagtggagaggctttactgcttcttaatacctgactgatacaattcatacataaggagcaccggattataaggagctctgatgatttttgtgaaaattaaaggattttaagtgcatcatatagtgtgaaaaatatggtactcaaAAGAGgcaataaacaagtaaacagcAGCCAAGAAAGACATGAACCATACAGTGAATTACTATtactctctacactctactaaaaacagtatttaaatgTAGATCCCCATTCATTTATATCTCATTTGCAAATTAAACAGAAGCCTGAATGAGAAATTTGATATCCAACCTTCTCTCCTTGTAAAGCAGGCACTGAGTCACGTAAACTGTGGAAACTGTCTTTAATGTGGTCCCTGCGTTTGCGCTCCAGTGCATTGTGATGTGCCCGTTTGTCTGCCTGCAATAAATAAAAGCCAACAAATagattaataaaacataattaaacaggCTAAAACAATCAATACACTCTAGCCCAGGCTTAGACTGCACAGCAATTTGACTAGAGATTTTCAAATGAGAGAAATATATAGGACATTGCgaggcttaatctctgtctgggaaactggcacaatatttatttttatttttttatcaagtgTTTGTAGAAAAAGGTACGTACAAATTACTTATTTACAAATTCTTCACATCAATAAGTATTGTTGACAAGATACaccaaaaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104325 lncRNA upstream 80239 1368102 ~ 1368585 (+) True G77373
TU104328 lncRNA upstream 99170 1345474 ~ 1349654 (+) True G77376
TU104330 lncRNA upstream 99170 1347235 ~ 1349654 (+) False G77376
TU104329 lncRNA upstream 102320 1345343 ~ 1346504 (+) False G77376
TU104327 lncRNA upstream 103560 1344096 ~ 1345264 (+) True G77375
TU104365 lncRNA downstream 11030 1463238 ~ 1464202 (+) True G77402
TU104366 lncRNA downstream 12698 1464906 ~ 1465270 (+) True G77403
TU104374 lncRNA downstream 28613 1480821 ~ 1483275 (+) True G77408
TU104377 lncRNA downstream 33625 1485833 ~ 1486321 (+) True G77411
TU104382 lncRNA downstream 41952 1494160 ~ 1494435 (+) True G77413
XM_022672564.1 mRNA upstream 119736 1319419 ~ 1329088 (+) True gcfc2
XM_022672563.1 mRNA upstream 130706 1304067 ~ 1318118 (+) True LOC107197738
XM_022672559.1 mRNA upstream 245682 1187120 ~ 1203142 (+) True LOC103043042
XM_022672557.1 mRNA upstream 269187 1038874 ~ 1179637 (+) True adam12
XM_022672570.1 mRNA downstream 17807 1470015 ~ 1479658 (+) True LOC103037734
XM_022672569.1 mRNA downstream 17811 1470019 ~ 1479658 (+) False LOC103037734
XM_022672573.1 mRNA downstream 45914 1498122 ~ 1514730 (+) True mthfd1
XM_022672574.1 mRNA downstream 76762 1528970 ~ 1563180 (+) True c9h15orf52
XM_022672575.1 mRNA downstream 80082 1532290 ~ 1563180 (+) False c9h15orf52
TU104123 other upstream 439982 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 816452 631714 ~ 632372 (+) True G77154
TU103901 other upstream 928234 519633 ~ 520590 (+) True G77059
TU103782 other upstream 1315664 106902 ~ 133160 (+) False ldah
TU104376 other downstream 32462 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 241148 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1447926 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1447926 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 1963960 3416168 ~ 3416240 (+) True trnav-aac_2

Expression Profile