RNA id: TU104374


Basic Information

Item Value
RNA id TU104374
length 2455
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G77408
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1480821 ~ 1483275 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttccagagctgtatatacaacatataaaaaattgaGTTGCTACTGTGTAAAGTTTTTAAGGAATGAATACAGTGTCATGGTTTCAAGATCAGTTTAAACCAAACTTTTATCAAGTTTGGCCCAACTTTCACCCATAATCTATATGTTTTAAAgggcctaaatgtatttttagctgtatgttttagtaaatgtaaattaagCCAATCTTTTCTGCAGAAAGCTTGCAGTAAAAGTCCTGCAACATGATCAGGTCATCAGTATCCACATCATGTTTCAAACAATTAACTTCAATAATTATGAATAACCTTAGTCTTAATTTGGACAGAGAATTTTAGGAGGggagatttaatatttttaacaacTTAAAACTAACTTTATGTGCAAGAGAAGGTGAACGCTGggataaaaaaagataataaatacatttaaaggtctcattccatcatttttttaaatcatattaaaatgtatagttgtgtctctagtatgaatgaatgccatgtaagtcattttttttttttttttttttagaaaaaaaaaaagtgctcaggtgtttctatttagccctgctttaaatcactggattagtggtctctgaagaaagacaggatttggctcttgctcatgaatattcatacatgcaaacatacagtatcgcctctgattggctaacagcactgctgcAAAAAACGCCTACCTGCCTTTTCCcacacagtcaattttacagctttaaaactcaaaggacaaaatgttttcagagatacagccttagttatagtagaagaaaatctttaaaaaactgtAGAAGAAATTCTTAGCCAAGCAGCTAGCCCTGCTTATTGTCGAGcgtcaatattaatattattcagCAATAAACTGAAGAAAGACACTTAAAAAAGTATGCACAtcactttttttataaaaacgaTTAAGCTAAAAAGGAGCAAAGGGATGTTTATAACTCGGTGAATCTTTAAATTAAGCAGAATGTATTTCTGTTTGAATCAAGAAATACAAGGTGGTGGCTAGTGTGGGCTGAGATCCACCAATGGTGGACACATGCATCTTAACTGTGAACATTTTGAAGTagattttagtcatttagtttaaaaagaagaagaaaaagaagaacacTATGTGATGAACCGTGAAACCATGACACTGTAACAACCCTCAACCTCTcaaaccattttaaaatgaagaaagaTTAGTCAATAATTACTTGTATTTTTACTTATATAGTcaggaaatatatttaaaataatgcatgATAACTCTTAAACCTGTCCAGCAGCCAATTCTCCATCAAAGCTCAAAATACaagatttttactcttttaactAATATGTCTGACAGTGGCAAATGAACGCAGATGGAAAAGGATGAGGGTAAAAATAGCCCTTATCACGGTGTTTTCCGGGGTGTATacaccaaaacattttttttttttttaaacatgccaCTAATTTGCTACAGGTGGGATGGACGCATTCAATCAAGTCTTTAAAAAATTAGGAACAAAGAAAACCTCTCAGTGCACAAGTGTTCCATGCATCATTCACAATGTCGAGTGGTGCCCTGCTTGTGTACATAAAGGTGGGGTGGAGTTCAGTGGGGTAGGTAGGTGGGGTTTAGTGGGGTAGGTAGATGGGGTGTAGTGGGGTAGGCAGAGTTCAGCGGGGTAAGTGGGGTTTAATGGCATAGGTTGGTCTGGGTTTAGTTAAGTAGGTGGGATTCAGTGGGGTTTAGTGGGGTAGGTGAGGTTTAGTGGGGTAGGTAGGTGTGGTTTAGTTAAGTAGATTGGTTTAGTGGGACAGGTAAGTGGAGTTTATTGGGGTAGGTGGAGTTTAGTGGGGTATGTAGGTGGGGTTTAGTGGGAGGTAGGTGGGTTTTAGTGGGTAGATAGGTGGGGTTTTGTAGGATATGTAGGTGGGGTTTAGTGGGATAGGTAGAGTTCAGTAAAATGAGTGGGGTTTAGTAGGTTCGGTAGATGGAGTTCAGTGGGATAGGTGAGGTTTAGTAGGGCAGGTAGGCGGAGTTCAGTGGGATCAGTGGGGTTTAGAGAGGTATGTAGGTAGGTGGGGTTTAGTGGGATAGGTGGGTGTGGTTTTAGTTACGTAGGTGGAGTTCAGTGGGGTGGGTAAGTGGGGTTTAGTGGGAAAAATAGGTAGGGTTTTTATAGGGTATGTAGGTGGAGTTTAGTGGGATAGATAAGTGGAATTTAGCGAGATAGATAGGTTGGGTTTAGTGGAGTATTTGGGTGGGGTTTTAGTTAAGTAGGTGGAGTTCAGTAGGTAGGAAAGTGGAGTTTTAGTGGGATAGATAGGTGTGGTTTAGTGGGTTAAATAGGTGGGGTTTTTATAGGGTATGTAGGTGGAGTTTAGTGGGATAGATAGGTGGGGTTTAGTGGGGTATTTGGGTGGGTGTGGCATTGCTTCACTGTGATCACTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104366 lncRNA upstream 15551 1464906 ~ 1465270 (+) True G77403
TU104365 lncRNA upstream 16619 1463238 ~ 1464202 (+) True G77402
TU104361 lncRNA upstream 28613 1448824 ~ 1452208 (+) True G77399
TU104325 lncRNA upstream 112236 1368102 ~ 1368585 (+) True G77373
TU104328 lncRNA upstream 131167 1345474 ~ 1349654 (+) True G77376
TU104377 lncRNA downstream 2558 1485833 ~ 1486321 (+) True G77411
TU104382 lncRNA downstream 10885 1494160 ~ 1494435 (+) True G77413
TU104357 lncRNA downstream 34487 1517762 ~ 1519995 (+) True G77396
TU104370 lncRNA downstream 59927 1543202 ~ 1551676 (+) False c9h15orf52
TU104450 lncRNA downstream 95002 1578277 ~ 1618327 (+) True G77447
XM_022672570.1 mRNA upstream 1163 1470015 ~ 1479658 (+) True LOC103037734
XM_022672569.1 mRNA upstream 1163 1470019 ~ 1479658 (+) False LOC103037734
XM_022672564.1 mRNA upstream 151733 1319419 ~ 1329088 (+) True gcfc2
XM_022672563.1 mRNA upstream 162703 1304067 ~ 1318118 (+) True LOC107197738
XM_022672559.1 mRNA upstream 277679 1187120 ~ 1203142 (+) True LOC103043042
XM_022672573.1 mRNA downstream 14847 1498122 ~ 1514730 (+) True mthfd1
XM_022672574.1 mRNA downstream 45695 1528970 ~ 1563180 (+) True c9h15orf52
XM_022672575.1 mRNA downstream 49015 1532290 ~ 1563180 (+) False c9h15orf52
XM_022672450.1 mRNA downstream 98481 1581756 ~ 1617335 (+) True plcb2
XM_007230365.2 mRNA downstream 161793 1645068 ~ 1647692 (+) True ankrd63
TU104123 other upstream 471979 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 848449 631714 ~ 632372 (+) True G77154
TU103901 other upstream 960231 519633 ~ 520590 (+) True G77059
TU103782 other upstream 1347661 106902 ~ 133160 (+) False ldah
TU104376 other downstream 1395 1484670 ~ 1485050 (+) True G77410
TU104477 other downstream 210081 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1416859 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1416859 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 1932893 3416168 ~ 3416240 (+) True trnav-aac_2

Expression Profile