RNA id: TU104450


Basic Information

Item Value
RNA id TU104450
length 676
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G77447
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1578277 ~ 1618327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcactagtgatgcccccccaacacaccaggagggtgaagattaactagcacacgcctcctccgatacatgtgaagtcagactccgcctctttttgagctgctgctgatgctgtagcattgctgagtagcatcacagcgctaacgctcggaggaaaagcagcgcagcgactcggttttgatacatcagctcacagacgcagccttgtgctgatccacatcaccctaggagtgatgaggggaaagagagagagtgccatctactttactgtactcacccagagagagcaagaacaattgtgctctctcagggctccagcacctgatggcaagatgcatgaatgggattcgaaccagcgatctcccaatcattgGTGGTTTAAGGTTGATTAATGTTCAATTTAGGATTAAGTTGCATTTATATTAGACATTCAGTTGATTGTTAGGTTAGCATCTACAATGAGGCATCTACAAtgcaccatccaaataaagggGGATGGTTTATAATAAAACCTAAACATATTAGTCTTTATATATTTAGCTATAGCTCCCTTTggttttatcttttatcttttttttgtgaaatgtaaaaaaaaaagactcaaaTTTTCAGCTGAACAACTCTGTATATCATATTTTCAGTTACTCAAGTTTGGAAATAAAGTTTTTGGAAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104370 lncRNA upstream 26601 1543202 ~ 1551676 (+) False c9h15orf52
TU104357 lncRNA upstream 58282 1517762 ~ 1519995 (+) True G77396
TU104382 lncRNA upstream 83842 1494160 ~ 1494435 (+) True G77413
TU104377 lncRNA upstream 91956 1485833 ~ 1486321 (+) True G77411
TU104374 lncRNA upstream 95002 1480821 ~ 1483275 (+) True G77408
TU104460 lncRNA downstream 35685 1654012 ~ 1655515 (+) True G77457
TU104468 lncRNA downstream 76837 1695164 ~ 1756066 (+) True G77464
TU104479 lncRNA downstream 79660 1697987 ~ 1698898 (+) False zfyve19
TU104480 lncRNA downstream 79660 1697987 ~ 1698898 (+) False zfyve19
TU104481 lncRNA downstream 79660 1697987 ~ 1698898 (+) False zfyve19
XM_022672574.1 mRNA upstream 15097 1528970 ~ 1563180 (+) True c9h15orf52
XM_022672575.1 mRNA upstream 15097 1532290 ~ 1563180 (+) False c9h15orf52
XM_022672573.1 mRNA upstream 63547 1498122 ~ 1514730 (+) True mthfd1
XM_022672570.1 mRNA upstream 98619 1470015 ~ 1479658 (+) True LOC103037734
XM_022672569.1 mRNA upstream 98619 1470019 ~ 1479658 (+) False LOC103037734
XM_007230365.2 mRNA downstream 26741 1645068 ~ 1647692 (+) True ankrd63
XM_022672452.1 mRNA downstream 79638 1697965 ~ 1708297 (+) True zfyve19
XM_022672578.1 mRNA downstream 116294 1734621 ~ 1752108 (+) True spint1
XM_022672577.1 mRNA downstream 116294 1734621 ~ 1752108 (+) False spint1
XM_022672455.1 mRNA downstream 187620 1805947 ~ 1831095 (+) True LOC103033947
TU104376 other upstream 93227 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 569435 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 945905 631714 ~ 632372 (+) True G77154
TU103901 other upstream 1057687 519633 ~ 520590 (+) True G77059
TU103781 other upstream 1445117 126248 ~ 133160 (+) False ldah
TU104477 other downstream 75029 1693356 ~ 1696981 (+) True G77471
TU104827 other downstream 1281807 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1281807 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 1797841 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 1798512 3416839 ~ 3416911 (+) True trnav-aac_3

Expression Profile