RNA id: TU104468



Basic Information


Item Value
RNA id TU104468
length 3396
lncRNA type read_through
GC content 0.35
exon number 2
gene id G77464
representative True

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1695164 ~ 1756066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


agaactaaactgaatctcctgtataactctgtacttcagtggagtgactttactgctccttaatacctgactgatagagtTCATATATAaagagcaccggattataagggcACTGACGATttgtgggaaaattaaaggattttaggattttaagcgcaccttatagtgtgaaaaatacgttattgttttttttttttttttgactgtgaaaaaagtcttgcctaatGTGCAGAGCCTTTTGTGTGGAGCCTAAAGTGGTACTTCTTTAGCAACACAGAGGGAATTCCtttagaaacatttatttttaaatagtgttttgtgtttattctgtACAGGTAACCTGTCTATGCTCTGCACTCATGCACTGATCTGTAGAAACTGTTCCCAAAACTGACATATCTTTACAAAACTGACCATAATTCTATTTACTCTATTGAAATATTTAGATTAGAAACTGAAAACttgtgtaatttgtaattttttttattttttttttaaatatgttcatTGGTCACTTTCACAGGCAGGGCTTGAGGTGAGTCATAGACTATACATACTTTTCATTAGGAAGTCttcatttaaaggagaactctggtgtaaaattgacttttagtGTAGTAAATCAGCATAAAGATTAAGAGGACTAACCTTttttgaatagcccacctctgctctcTTGCAGCGTTCTGAGATTTAgtcattttttgctttttgcttatttttttacaccgttttacaccgttattcagACTCtgagtagctccacaccttattGTTAGAATCCTGAAATGTCTAACATTTAAAACgaagcattaataactttaaaagtgcaaaaaagcttattaaaaactactttttatAACCCGTAGTGTAACCTAATCTCTGGGTGGAGATTTACCTACGCTATGGtttataaaactgtttttaataagcttcttgtgcagttttaaagttattaatgcctcgttttaaatgtcagagctctcgggattctaccaatgaagtgtgaaactactctgagcctgaataacggtgtgaaaaagagatttatctgcaagggcaaaatatgccccatatcctCTATTGTAAAAGCCTGTTTGGACAAATTGCacaaattactggatctcagaaagctgcaggagagcggaggtaggctattcaacaaatttaaaagtacttttatcatgttttgctacagcaaaagtacattttacaccagagttctcctttaaattactttttagaaacttttttttgttattttttgttgtacATGCTAAATATTAAAGATGGTCTGTTTTTTAGAGAATGGGACTGAGCATCAGTTGCAGTCTATATTAACCAAGTTTGATAGCCATTtgtatgaaactgaaacttgtgtctttttttatgttttgctgttttattttttttattttttttttaatatgtaccacatatatgttttattattttatcaggtTGTTATTCAGCAACTCTGTGCTCAGggttaaacagtttttagtgaTGTATAAgatcagttctgattggtcaTGGGAGTCTGTTTGTCGGGTACAGACTAAGACTGTTCATGAATGTAACGTAACATAATCGTTGATGATAAAAGAATAAATGGATCAATAAATGATTGAATTAGTCGATTGGATTTGGCTTTGCCTGGACCTGACAAGCTGTTCCTCAGTGTTGTGGGGAGAAGGCTGAATTTAAAGGAGAAAGTTGGTGTAAAAGTGGCTTTTAGTGtagaaaaacatgataaaaagtacttacttttgttgaatagctcacctccgctcttctgcagctttccaagatttccaaggtttttaataagctttttgtgcacttttaaagttattattgcctcgttttaaatgtcagggctctttaAAAATCtcccaatgaggtgtggagctactttgagctggataacagtgtaaaaagcaatttatctgcaggggcaaaaatatgccccatatcactcAGTCTAAAGGCTGTTTAGACTAACAGaattaaattactgtatctcagaaagctgctaAAGAGGGGAGatgagctattcaacaaagtttAATACTCTTAATCCTGCTTTACTACACCACACatcaatttcacaccagagttctcctttaaacaattttttttttcttcaaatttttaaaaaccAGTACATTTGTACATATACACCATCTTTTCTGTAGTTTTAACTAAATGCATGAAATGTGATTTGATAAATGCTGATTGACAATTACTTCTGTGAACTACACTGTGCACTCAAGACTAAACGAAATCGGCGTGAAATAACTTCTTCCACACTCCTGTTTGTACATagatttatatatgtgtttctCAGATGTTTCTGaagtctgttttgtttttaacgctccaataaaaatatagactagattttttttctttgtgcttGTAATTTATTTCATCGGCTTTTTGCACATCTTTAAAACGTTAAGTTTTTGATGtcactaaacttttttttttcacatttttaacatcaGTTATAGGCTTCCAATCTTCAGCTTCCTACAGTTGTTTATTTGTAAGAGGTTTATTatgggctccgagtggtccaggggtgctgctactatgatcgggagatcgctgattcgaatcccagtcatgcagcttgccatcagctgccggagccctgagaaagcacaactggccttgctctctctgggtgggtacagtagatggcgctctttcccctcatcacatGTGGATGTGATGTGGAtcagcgtctgtgagctgtaagactggtggaggaggagaacatgatgccaagatgcatgaaaactgtgattaaaaaccaggattattccaccaaatattgattatttctgaactcttaaaactttatgaatatgaacttgttttctttgcatcatttgaggtctgaaagctctgcatcttttttgttatttcagccatttctcattttctgtaaatatggTTACCCAGAAAGATTCTACTGATACCAACTTCTATCTTTTAGCCACTTTTTAGTCACCTCatatataaagaataaatgTATAACTGGATATATAATCTAAACATGCTTATTAAGAGGGGTTTTCTTTTGTCATCAATTGCATTGTTTAGTGCTGTTGGGTAACTGTGCTTCATCAGATTCACCAGCAGGGGGAGACATTTGCCTATTCATTTTGCCTATATGAACACAGCGCTTAGGAATTTACTGTGTTAGATCAGGTCAGAGCCAGAGTTCATCTGGAATATCatcataataaaacaatatacaaCACAGAGGCTCaatttaatacaacaaaaatactaaatactacccagctggcacacaaccgaccaTCAACATTGAAATATGGttaaagtaatgtctgttgttgcaATGTAATTTTACGTTTCAtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104460 lncRNA upstream 39649 1654012 ~ 1655515 (+) True G77457
TU104450 lncRNA upstream 76837 1578277 ~ 1618327 (+) True G77447
TU104370 lncRNA upstream 143488 1543202 ~ 1551676 (+) False c9h15orf52
TU104357 lncRNA upstream 175169 1517762 ~ 1519995 (+) True G77396
TU104382 lncRNA upstream 200729 1494160 ~ 1494435 (+) True G77413
TU104493 lncRNA downstream 1098 1757164 ~ 1771913 (+) True G77484
TU104502 lncRNA downstream 111029 1867095 ~ 1869007 (+) True G77493
TU104515 lncRNA downstream 156466 1912532 ~ 1937832 (+) False LOC103033080
TU104512 lncRNA downstream 159299 1915365 ~ 2009418 (+) True LOC103033080
TU104528 lncRNA downstream 270624 2026690 ~ 2030616 (+) True G77510
XM_007230365.2 mRNA upstream 47472 1645068 ~ 1647692 (+) True ankrd63
XM_022672450.1 mRNA upstream 77829 1581756 ~ 1617335 (+) True plcb2
XM_022672574.1 mRNA upstream 131984 1528970 ~ 1563180 (+) True c9h15orf52
XM_022672575.1 mRNA upstream 131984 1532290 ~ 1563180 (+) False c9h15orf52
XM_022672573.1 mRNA upstream 180434 1498122 ~ 1514730 (+) True mthfd1
XM_022672455.1 mRNA downstream 49881 1805947 ~ 1831095 (+) True LOC103033947
XM_022672579.1 mRNA downstream 80723 1836789 ~ 1854878 (+) True LOC107197725
XM_022672585.1 mRNA downstream 244786 2000852 ~ 2006414 (+) False LOC103033080
XM_022672584.1 mRNA downstream 245879 2001945 ~ 2006414 (+) False LOC103033080
XM_022672588.1 mRNA downstream 331547 2087613 ~ 2146276 (+) True dnajc17
TU104376 other upstream 210114 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 686322 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 1062792 631714 ~ 632372 (+) True G77154
TU103901 other upstream 1174574 519633 ~ 520590 (+) True G77059
TU103781 other upstream 1562004 126248 ~ 133160 (+) False ldah
TU104827 other downstream 1144068 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1144068 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 1660102 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 1660773 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 1663861 3419927 ~ 3419999 (+) True trnav-cac_1

Expression Profile