RNA id: XM_022672452.1


Basic Information

Item Value
RNA id XM_022672452.1
length 2247
RNA type mRNA
GC content 0.41
exon number 9
gene id zfyve19
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1697965 ~ 1708297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgttttccttccTTAAACATGTAGCTACAGTAGGACCTAGGCTGAAATGTCTGCATTTTCAGACCTCGCTAGtggtttaaatgttaatttggtgataattaatataaataaatgtgaatattagtgaataatagttaCATTTATGTAGCTCGTTACGGCTTATGTTCTCTGAActgtttgtttataaatgtgGACAGTCTTTTCAGTGTAACTTAACGTTTAATCAGATATAGTAGCTTATTAATTATCAGCTATGAATAACCGCTGTTATGGCTGTGCGTCAAAGTTCACTCTCTTCAAGAAAGAGATGGGCTGTAAAAACTGCAGCCGCTCGTTCTGTTCAGGCTGTCTGGAGTTCAGTGCTCTGGTGCCCCGGTTCGGTAACACTCAGCAGAAGGTGTGCAGGCAGTGCCACGGGAACCTCACCAGtaatggAATACAGAATGATGCTGCAAGATGGTCTCCACCTGAAAACTATAAAAAATGTGAGACATGTATGCACTCAGAATGGTGTTTCTGCTTTGCGCAGGTTCATCGGCCACCTGATACCAGGACTCAGACTGAACAGGCCAGTGACTTACTCACGCAGATGACTGAGGAAGTTGCCATTGACAACCAGCATTCTCCAGAGGCTAATAACCCAGAGGCTCCTGCCAGTCCTCTGAACGATCTCAACAAGCTGGAGTCCGGGACGGAGAACCTGGAAGATGAGCAGCTGTCCCTGAagaagctggaggaggagaagagtcGTCTCATGGCTGAGGCCATGGATGAGCTGAAATGTGAGGAGCAGAATCAGGAGCAGCTTCTTCAAATGGCCAAAAGGCTGGCTGTGCTGCAGGGACGAGACCCGGCCAAAGttactgTGGCAGACATCCAGCATCCTGAGAGTGATGAAGAAAATGAGGAGGAAGCGATTGGCAGAGTTATAAAAAGGCTGTCAGAAGAAGCTGCTTTAGACGAGGCCAGTGGATATAACATCCCTCCAGAGCGAAGCGGGCCAGAAAATAAGGAACCGTCCAAACCCAAGAAAACACAGTTTCCAGCTCAGTCATCTAAATCCAGACCTTCTGCTACTGCGTTCGTGAGGCAGAGCTCAGACAGTGAGGAGGGTGATGATGAGGAAGAGCTGCCGTGGTGCTGCATCTGCAACCAGAACGCCACCATTCGCTGCCACACGTGTGACCGGGACCTGTTCTGCAGCCGCTGCTTTAGGGAAGGCCATGACAAATATGACAGAAAAGAACACCATACATCCAGTTACAGCGCCCCCAAAAAAGCCAAGAAGAAGACATGACCATCAAAAAGTGTTGATATTGTCTGTGTGTAACAGTGAACTTgtacagtagtacagtagtCAAATCCAAACCCAAGGTGAACACGGTTTCTCATTGACGAGACTAGCCAAAGTAGGTTgctaatttacttaaatatataagcGTAGTGACTCAGAGGTGTCCAGGGTAATTCATAATCATCTAACCACTTGCAGTAGtatactaaatataatataatgtatatttttttccttttggttGGATTTTTTAATATGAAAAAGCAAGAAGCAAGAATCAAACTGATTATACGTAAGgtcaaaatatacatacagcataaataatatgtataaaaatgcatatttaataaattttctTGCCAGAAGATAGCTGATCTACGGCCGCAGCACATCAgtaccaatattacacattatagcacgaacctccattaaaaaaacattattaaaaaaagtgttctaaaccgcataaaatttaaatgtaaaaataagctCCTGTTTTGCCTCGTCTGCTCTTTCCAGTGCAGTGAGCggagctaagctactgtttcttTGGCTGGTAAACTTTTGCagtggctggttcatggtctattctgatggaaaaATGATGGGCAAAAAAATTTAACGGACACAGggtctgaaattattaagtaataatCAATGTggcttttgtgtatttttgactaTGTATGAATGTGTAATGCGTTGGTTCAGCTTGTCAGCACTACTATTATCTGATACTTTCACCATGAAATAGATTTGTGAGTCATACTGACTTtccataattattaaattaaaaataaagaaagaaaatgatttgTTTTCACTTAATAAGACAAACAGATTTCCTTTACTTCTGCTTAGCCATGCTGTGGTGCTTTCTAAATATTGTGGCCAAAGAAATGTTTTACTATTGGTAATTAAAGCAGTGCACGAGAGTCGTTTATCTTAaaa

Function

GO: NA

KEGG:

id description
K24778 ZFYVE19, ANCHR; abscission/NoCut checkpoint regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104460 lncRNA upstream 42450 1654012 ~ 1655515 (+) True G77457
TU104450 lncRNA upstream 79638 1578277 ~ 1618327 (+) True G77447
TU104370 lncRNA upstream 146289 1543202 ~ 1551676 (+) False c9h15orf52
TU104357 lncRNA upstream 177970 1517762 ~ 1519995 (+) True G77396
TU104382 lncRNA upstream 203530 1494160 ~ 1494435 (+) True G77413
TU104469 lncRNA downstream 6268 1714565 ~ 1756066 (+) False G77464
TU104493 lncRNA downstream 48867 1757164 ~ 1771913 (+) True G77484
TU104502 lncRNA downstream 158798 1867095 ~ 1869007 (+) True G77493
TU104515 lncRNA downstream 204235 1912532 ~ 1937832 (+) False LOC103033080
TU104512 lncRNA downstream 207068 1915365 ~ 2009418 (+) True LOC103033080
XM_007230365.2 mRNA upstream 50273 1645068 ~ 1647692 (+) True ankrd63
XM_022672450.1 mRNA upstream 80630 1581756 ~ 1617335 (+) True plcb2
XM_022672574.1 mRNA upstream 134785 1528970 ~ 1563180 (+) True c9h15orf52
XM_022672575.1 mRNA upstream 134785 1532290 ~ 1563180 (+) False c9h15orf52
XM_022672573.1 mRNA upstream 183235 1498122 ~ 1514730 (+) True mthfd1
XM_022672578.1 mRNA downstream 26324 1734621 ~ 1752108 (+) True spint1
XM_022672577.1 mRNA downstream 26324 1734621 ~ 1752108 (+) False spint1
XM_022672455.1 mRNA downstream 97650 1805947 ~ 1831095 (+) True LOC103033947
XM_022672579.1 mRNA downstream 128492 1836789 ~ 1854878 (+) True LOC107197725
XM_022672585.1 mRNA downstream 292555 2000852 ~ 2006414 (+) False LOC103033080
TU104477 other upstream 984 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 212915 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 689123 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 1065593 631714 ~ 632372 (+) True G77154
TU103901 other upstream 1177375 519633 ~ 520590 (+) True G77059
TU104827 other downstream 1191837 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 1191837 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 1707871 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 1708542 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 1711630 3419927 ~ 3419999 (+) True trnav-cac_1

Expression Profile