RNA id: TU104512


Basic Information

Item Value
RNA id TU104512
length 4456
lncRNA type sense_over
GC content 0.35
exon number 2
gene id LOC103033080
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1912532 ~ 2009418 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtctcttaaatttttttcctagagctgtatatcagggtttatatatgtatatatcttcGAATGCCTCAAAGTTCACAACTTTACGCTAACTTCACGAAAACCAGGATCACGTATAGGCTCAAATGCTTCTACAGCTACAGCACCATTATAGTCAAATCTTACATGCAGCTCCTCAAAcgttgtgtaaaaaaaaaatgccttaaaacatcAAAGTACAAACGCAACAGTATCTGAGGCAGGAAAGTGCATTGTTCTCCCGCAAAGTCAATCTCCTCCCTACTCACTCATTGctggttttatttaatatataaataacgaagaaattaaaaaaaggtaaaaaataataataataataataataataataataaaaaagtagaagAGAAAGTTGGCGAAGGCTGGATCTGCCGAAAGGCTCCGTTGGATTCAAAGCCGTGAAAAGAGTTGTTGTAAGAATAAAAGTTGTTGTTGAAGTAGTTCTAGTTGTAGTACCTCACTGAGGCTGTGCAACGTGCACTGGGAGCAGAATCACGCccaatacagaaatacagaaacaaaCCAGTCCAAAAAAGAGaggacagaaaagaaagaaagagtgtgaggaaggtgtagagaagaagaaaaaggagtagagaaagaggaggagtacCCAAACAATGTGATTAATACAGGGCTATTACACGGGCTGGGGAACAAACACTTccaaaaatgtttcaaaaatgacataaatcataaattttaaactaaaatgaaaGATTGAATTGCCATGAATTGTTGTTCTTGTTGCAACTGAACcactaaaattactaaaatatctATGCACTTTTAATCCGCTACAATATTGCACATTCAGTACAAATGATTATAGTACAAATGCAGGGTAAACGTAGCTAAAAGCACTTGGGACAAAGCAGTTCCAGTCGACGtatctatataaaaaataataaaaagaaaagaaaagaaaataataaaataaaccctAAAGGAAGAAGTGTACTGCACAGGCAATGTGGATTATGGATTATGTCATTCAAAGCTTTTTATGTCAtttaaagctaaatatctaCTAGTTCTGTTATTAGTAATGCAGAAACTGTCTGCAGCTTAAGATGCTAAGAATAAATCTGAAGTCTGAGTTCATGAATAAAACAAATTGTAGGTAAAATAGATCAAGTGATTTGTGGATTTGTGATGgtccataaaaaataaacttagtATGAGATGAAAATGGGAAATTGTTGATTGATATTAGAACACTTTAAACTGACAGAGGAAAGCAGAGTAAAGTGATGCTGTCAGTTTTAAGCCCCAgtgaatcatttttttatgtttaattgtaAAACTGAGAACACTAACAATACAGTGCAGCGTTCGACCTTTATTtggtagtttgtttgtttgttttcccctcctcttaactttttctttaagcttttcttaattttcctctccatgattattttttgtctcgttggtttgtttcatttaattcatttgtttctggtttaagctgtgtttttgttttgttttagttgtgatgtgatgtgaagTAGCACTAAAAGTCTttactactatttttttttattttattttattgttttgtttttcctgaGAACACTTGATTAGAATTATTTATTAGTTCTGTTGGTTCATGGTTTActgtagttttgtagttttgaccTCTGAAAGTTTTAGACGAACTCTTTGAACTGTTCTAATGGTCTAATTGTCTAATTGTCTTGTCGTGCCGGTACTTTTATTCCAGCTACGCTGGGACTGGGATTCTTGATTGTTTAATCATTTTGCTGGACGTTTATCGGGTTTATCGTTTCATTGTGTATCTTGAGTGTAGATAAGCCATCTTAATCCCAGTTTGTCAAGATTTGACTCCGGAGATGCTGAGAAGCACTTGCTTTGTGCATATATAGACTGTAGATATGAGACTGATATTCTGTAGGCTGCTATTTCTAACTGTATATGTtctgtaaatatgtttattttatttatgatctCTGTCTGTTTGAGTCGAGAACATCTGTTATCTCTCGTAAAAGCTGCGCTCCTCCATGTTGACTTTTCAAGACTTTTAAAGTCTTTTGAATTCTTCCCAttgactttttttaaagcagctttCGCGTCTGAGCACAAGGCATTACAGCAGCTCGCCCATAAAGCACAACCTCGACAACTCGGCTCTCGCGCCTGCTGAACACATGCTGAACACACAACAAGTCCTCCATTAAAGACTAAAAAGATAAAGATTTCTTATTCTTAGGTCTTCCTAAAGGGAGCTGAGCGTCATATCCTTCCCTAAGCTACTGAGGGCATTTCTTCTTCCACGTTTCTTCGTGTCACGTGAGAAACGTATCTCACGAAAGGTACAATGTACTGTTGGTACATGTTTCTCACGCATCGAGCTCTCAGTGGCTGGACTTCACTCTCAAACCATTTCATTTCACGTTGTTGCACAATTGTTGGACATCTGTCAGAAACTACAAAAGCatatttgaatttatttaaattattcaagTTCTCTAATTCAATGTTTGTGATTTAAAACACTGGAATTTGTACAGTAGGCAGCACCACAAACGCCATTCGCTGGAATTTCCTCGAACAATGCTTCTTTTGTTCAAatggtgtcttttttttattttattttattttattttattttataaagagCTGTTGCTGTTTCGTTTCTCTCACATCTGGACTATCTCCAGTACAATGCAGCTATTACTGAAAGACTGTAGGTGCTCTCATTTAAAAACCTGTGCGTTTTAACTACTGCTGTTGTTAAAATGACTGGGAGACTGAAGTCGCTCGTTCGTATGTATTTACTTGATTGTTCTACACAGTATGTGCCTTGTTGACACAACAGTTGATCTAACAGCAATCTAACTACTGGGCATTATTAGAGgcctataataaaaataatatcaataataataatcattctACACCAGTAGGTCTCAGATAATAATCTGTAATGACGACAAATAGCAGACGCTGGTAGCATTGTGCATTATccatctgtatctgtatcattggtttattttcattgaTAAAAAGGTTTATAGGCAcgttaaatatgatttaaaaaaaaaatatgaatatgaaatcaGGCTAAAGCTCCTTTTGGATAGATTTAATTTTACATGGAGTGGTggagtaatgtaattttacatttctattaCATGTATTTCCTGTTACAgagttgggccaatgtagtgtttggagtcttgcccaaggactcttattttgGAATAgcacagcattttttttcacccagacctggaattgaacccaagTCTCCCTCATGATGTAGTAGCTCATAAacaggtggtggtggtgttatccactgcaccacaccaccCACAACAAGCACAAATGACTCAGTCTGTTGCTTCCTATTTATTACCTTTTATGGTATAATGAAAATTTAGGTTGAAAATGAGCTTTATGACTTTTATGTCTTGAACAACATCAAGTATCAACTTTCTGTCTCATACCGAATCATGGATTGACTTGATACAGACTAAAATCGAACAGAAAGTCTggtaataattacattacccCAACTCCACACATAAAACTAATCCCATTCAAATAGGGcttaatatgaaaataaacagatgATGTTGTATAATGGTTAAAATAGGCATGTTATGGTACTTAGGAAGACTTTAACACCTCTTAAGGtccatttcttacatttaaggCCACTTCCTATCCAGTTGCCATAGCCATACGTAAGTGATCAGCGGCCGACCAGTAGTAGAAGTGATCGTAGAGTTGATCTTTCACCTGCGACCAGCAAAATGCACATAGACAAAGCATCGACACTAATCAATCCTACACTATCCTACACTAATCAAAACTCTACATgctcaaaaaaatcaaatcatggTTCAAATTGGATGAATTTCTCAGTACTGTCTCTCAGTAACTCCGCAAACCTGGCAAGCCACATATTACTATAAACCTTATAATACTGGAATATCGTCTTCTGAGGTTCAGACTGTGAAATTGTATAATCATAagacatatttatttatgatttctTTCTCGTGCAAAGATTTTACTGTATCTCTCTATACGAGTTTGACTTGAGTAATGAAAGATGCTACTAAATGGAGAACGTTTTTAATAGACTTTGTAGAAGTGCCATtagatttaatataatttttgatAAGAAACGTATATTTTATAGGAAACGAATGCTTCGATGTTAGTGCCCTAGTGAATGTAGGTGACAATCTGTTTGATTTGAAACACTGGTTgaatttccttcttttttttttttttttgcagttttctttttcattatctGGAACTTGTGTGGTTTTTATTTGGCGCTTTTGATGTGTACccttgtgtgtgtgctgtgaaaaagtgaCAATCTTGAATTAGATCTTTATTTAGATGATGCATAgattaaaaagaacattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104502 lncRNA upstream 46358 1867095 ~ 1869007 (+) True G77493
TU104493 lncRNA upstream 143452 1757164 ~ 1771913 (+) True G77484
TU104469 lncRNA upstream 159299 1714565 ~ 1756066 (+) False G77464
TU104480 lncRNA upstream 216467 1697987 ~ 1698898 (+) False zfyve19
TU104528 lncRNA downstream 17272 2026690 ~ 2030616 (+) True G77510
TU104544 lncRNA downstream 51695 2061113 ~ 2066854 (+) True LOC103031311
XR_452794.3 lncRNA downstream 51762 2061180 ~ 2066701 (+) False LOC103031311
XR_001518744.2 lncRNA downstream 51804 2061222 ~ 2066701 (+) False LOC103031311
TU104557 lncRNA downstream 175451 2184869 ~ 2185952 (+) True G77531
XM_022672579.1 mRNA upstream 60487 1836789 ~ 1854878 (+) True LOC107197725
XM_022672455.1 mRNA upstream 84270 1805947 ~ 1831095 (+) True LOC103033947
XM_022672578.1 mRNA upstream 163257 1734621 ~ 1752108 (+) True spint1
XM_022672577.1 mRNA upstream 163257 1734621 ~ 1752108 (+) False spint1
XM_022672452.1 mRNA upstream 207068 1697965 ~ 1708297 (+) True zfyve19
XM_022672588.1 mRNA downstream 78195 2087613 ~ 2146276 (+) True dnajc17
XM_022672590.1 mRNA downstream 237633 2247051 ~ 2312662 (+) True fsip1
XM_022672592.1 mRNA downstream 237633 2247051 ~ 2312662 (+) False fsip1
XM_022672591.1 mRNA downstream 237633 2247051 ~ 2294060 (+) False fsip1
XM_007257942.3 mRNA downstream 449027 2458445 ~ 2464252 (+) True LOC103031026
TU104477 other upstream 218384 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 430315 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 906523 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 1282993 631714 ~ 632372 (+) True G77154
TU103901 other upstream 1394775 519633 ~ 520590 (+) True G77059
TU104827 other downstream 890716 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 890716 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 1406750 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 1407421 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 1410509 3419927 ~ 3419999 (+) True trnav-cac_1

Expression Profile