RNA id: TU104557


Basic Information

Item Value
RNA id TU104557
length 1059
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G77531
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2184869 ~ 2185952 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTAAGTACacattatttactcagtaagtactcagaaacaacagggagcgtctggctgtattatgtagtgtacagtgtctTACttttcttactctgtaagtaacTACACAGTATAATAACGCATTACCGACGTTtttgtgttaaatatatatataataaacggTGTTTTGtctatttaataattaaagctCGTTCTTGTCCTttttaacactatttttttttcaatgcaaaGTGTGCCTCTGAGATTTGATTTTGCTCACCGTCGCGTGAGGTCACTCAGCGATTACGCAAAAGTTATTTTAAGAGTGATGCAATCTGCCCAAAGCAATGTGTCACCCCTGAAGTAAATACTGCAAGAGCGACACTTGCTTGGCATTTTGCTCGGCATCGGGGTAGtggattattttattacttttaaatgaGACAAACCTGATGGAAAACTTTATCtactaaaatagaaaatagaaggGGTTGTGCAaactttctttttaagaaaGTTCTCAAAACCGCTCAGTctgaaaaacctaaaaaaacacaaaaatgctgGTGTTCTTTTAGTTTAAACAGAAGTAAAAGGAggagaaaacattttaaaactaaaaagacGCACAGCTATACAGGACAGTTGAGCACTCAACGCTTTTATTAcctttttatctgtttaaaagTTGTTCAAGcatcttatatttatatattctactTAGGACTTACTTAACAAATGTCCGTGCAATAACATTTGCCGatatgtctatagtgtaagtgattatgtgtatttttattgtgtgtattctttatactgtaaagtttaaaaatctgtatattttattttatgttatttattttattttattattctgcttgttgtaaatactgttctCTGCCCAATTCTAGGaacctgcacccaagtttttccaCTCaaatgtacacctgtactctgtgacctgacaataaaaatcttgaatcttgaataaatacatttggaaCACTGCGTTTTGATTCAATTATTAGAAAATGCAATGTGGATGCTCTTCATAATAAGGTTGATTAATAACAGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104544 lncRNA upstream 118015 2061113 ~ 2066854 (+) True LOC103031311
XR_452794.3 lncRNA upstream 118168 2061180 ~ 2066701 (+) False LOC103031311
XR_001518744.2 lncRNA upstream 118168 2061222 ~ 2066701 (+) False LOC103031311
TU104528 lncRNA upstream 154253 2026690 ~ 2030616 (+) True G77510
TU104512 lncRNA upstream 175451 1915365 ~ 2009418 (+) True LOC103033080
TU104558 lncRNA downstream 4370 2190322 ~ 2190664 (+) True G77532
TU104568 lncRNA downstream 11058 2197010 ~ 2290008 (+) True G77534
TU104579 lncRNA downstream 76034 2261986 ~ 2303830 (+) True G77544
TU104559 lncRNA downstream 107337 2293289 ~ 2317480 (+) True G77533
TU104595 lncRNA downstream 134263 2320215 ~ 2321005 (+) True G77559
XM_022672588.1 mRNA upstream 38593 2087613 ~ 2146276 (+) True dnajc17
XM_022672585.1 mRNA upstream 178455 2000852 ~ 2006414 (+) False LOC103033080
XM_022672584.1 mRNA upstream 178455 2001945 ~ 2006414 (+) False LOC103033080
XM_022672579.1 mRNA upstream 329991 1836789 ~ 1854878 (+) True LOC107197725
XM_022672455.1 mRNA upstream 353774 1805947 ~ 1831095 (+) True LOC103033947
XM_022672590.1 mRNA downstream 61099 2247051 ~ 2312662 (+) True fsip1
XM_022672592.1 mRNA downstream 61099 2247051 ~ 2312662 (+) False fsip1
XM_022672591.1 mRNA downstream 61099 2247051 ~ 2294060 (+) False fsip1
XM_007257942.3 mRNA downstream 272493 2458445 ~ 2464252 (+) True LOC103031026
XM_007257927.3 mRNA downstream 279358 2465310 ~ 2468562 (+) True LOC103026471
TU104477 other upstream 487888 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 699819 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 1176027 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 1552497 631714 ~ 632372 (+) True G77154
TU103901 other upstream 1664279 519633 ~ 520590 (+) True G77059
TU104827 other downstream 714182 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 714182 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 1230216 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 1230887 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 1233975 3419927 ~ 3419999 (+) True trnav-cac_1

Expression Profile