RNA id: TU104605


Basic Information

Item Value
RNA id TU104605
length 1518
lncRNA type sense_over
GC content 0.38
exon number 4
gene id LOC103031026
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2458445 ~ 2464321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTTACACCTCAGCccatgtctgtcctgtgtttttccctcttttggttttctgtgctcctgccctgttttcctgtcttgtgtttccagccatgtgcttttttgagcacatggcattgttttgttattgtctccgccctagccccgccctagccctgcccaagccattagtgttgtcaccttgtgtctcatttgtaactccgccccctcattacttccacaggtgtccctagtgtgtgcctgtgtataaatacctcatgtgatccattgttctcggtcgcgctttttgtttgaccttgtcccgtgtgtttgttattttggtctACAGTTCTGGTTTGTTATCTTTATAGTGTTTTGTTCCTTGCTTCTCAAGACCTagtttatcttttgttttatagtctttaagtgttttatttaagtgttttctttgtcagtttttggtttgctttttttgtcatgtctaaaaataaatatgacttgcatttgcatccggccTCCTCCATGTTACAGCAGTTGTGTTAAGCAGTTATCTGGTCATTGCTCTTCTCTGGATTCAGGCGGTTCTGGTGAAGTGGCTCCCGGAGCTTTCGCAGAACGTTGGAAGTGCATTTACCATCTGCTCTTCTGATTATAAGAATATTCATGCTATTAAGCAGCAGCTGCGAGCATTGTGGAGATATCAGCTACGATTCACCACTGAAGCCACTGCAGAGATATGGAAGGACATTGAGTCCCTGCTGTATCCGTTACGACTGTGTTAAAAAAGACATACTGGGAAGTTCAGCACGCCAGCTTGACCAAGAGTTTCCACACCataaaaagacataaaataatGTCTAGTATTCTGACCTGGTTACTCTGGATGGTGAGAAGCAGGATGGTTGTTTCGACGAACCAGAACAGGATCTGCTAGAGGAGATGGTCTTGGTTCAGGTCCGGTTGTTTTAATCCACACCCAAGTGCGATAAACCAGACCAGATTCTAAGCTCAACATGTTGggtatttttaaaagcttttttatatACCAGACTTCCTTTGAATAACTATCAAATAAATATCATTTTCTTTTGGCCCACTTACTGCATTGATTGATAGGACTTGCGCAGACTGCAAAAAAATGGGCTTCTTTTCTAATAACTGTTAATTTGAGCTATTTATGAACActttaagaatatatataacCTTAAGAACCTGCCAAATTTCTTCAAAAGTCATTTTGTTTTGATTCTGCCtttttatctgtactttctataGTTATAATAATCAACATCAAAATGTCTATGTAAATGTTAATATCATACATATGTTTATTCCCTTTTTATATAACAAAGGCCTTTGTTGTTAAGCTGTACATTCCTATAACTGTGTGTGATTTTAGATTGAGCATGTGAAACAGTTTCAAAAGTCATGATTCTCAAATACACTACAGAGGTTATGCTGTATTATGTTGTtgctctaaatatatatatttttctttctttaaaaaaataaaaatatttcaaagttgtcaaacttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104603 lncRNA upstream 9342 2399999 ~ 2452445 (+) False G77566
TU104602 lncRNA upstream 9342 2448192 ~ 2452445 (+) True G77566
TU104612 lncRNA upstream 38841 2411527 ~ 2422946 (+) True G77569
TU104595 lncRNA upstream 140782 2320215 ~ 2321005 (+) True G77559
TU104559 lncRNA upstream 144307 2293289 ~ 2317480 (+) True G77533
TU104812 lncRNA downstream 237878 2702199 ~ 2713270 (+) True G77711
TU104813 lncRNA downstream 254802 2719123 ~ 2743611 (+) True G77712
TU104817 lncRNA downstream 345238 2809559 ~ 2828232 (+) True G77715
TU104819 lncRNA downstream 368247 2832568 ~ 2869809 (+) False G77716
TU104818 lncRNA downstream 402840 2867161 ~ 2869809 (+) True G77716
XM_022672590.1 mRNA upstream 149125 2247051 ~ 2312662 (+) True fsip1
XM_022672592.1 mRNA upstream 149125 2247051 ~ 2312662 (+) False fsip1
XM_022672591.1 mRNA upstream 167727 2247051 ~ 2294060 (+) False fsip1
XM_022672588.1 mRNA upstream 315511 2087613 ~ 2146276 (+) True dnajc17
XM_022672585.1 mRNA upstream 455373 2000852 ~ 2006414 (+) False LOC103033080
XM_007257927.3 mRNA downstream 989 2465310 ~ 2468562 (+) True LOC103026471
XM_022672489.1 mRNA downstream 7077 2471398 ~ 2474791 (+) True LOC103026149
XM_022672594.1 mRNA downstream 296349 2760670 ~ 2864439 (+) False LOC103030398
XM_022672595.1 mRNA downstream 323627 2787948 ~ 2864439 (+) True LOC103030398
XM_022672596.1 mRNA downstream 444288 2908609 ~ 2957430 (+) True eif2ak4
TU104477 other upstream 764806 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 976737 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 1452945 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 1829415 631714 ~ 632372 (+) True G77154
TU103901 other upstream 1941197 519633 ~ 520590 (+) True G77059
TU104827 other downstream 435813 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 435813 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 951847 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 952518 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 955606 3419927 ~ 3419999 (+) True trnav-cac_1

Expression Profile