RNA id: TU104818


Basic Information

Item Value
RNA id TU104818
length 2477
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G77716
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2832568 ~ 2869809 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctgaataaaaaaaataataattggcgGCAAAATTAGATATTTATAAGCTCAAAATCAGCATTACAGTTGTACTAGCACTGTGCTTTCATTATAACTAATTTCATTATAATTTACTGCAGTCTGGCATCGGAGATTTGCCAGTAGCCCCGCCCATGATCACAGAGTTCATAGCCCAAAGTTCCACAAattgaaaacatattttatttttaattcagggAAGAATATTAACACAATAAATGTCCACAACTACCCGTCTCGCAAAGATgcaatacatataatacatgtaATTGACTGTCCCaggtcctccaggtggacgtcCGTTTCCTGTCACTTGCTGTTTGGTTGATTGCTGAGTGTAAAAGATTGTGCAGAGTGTTGAGTGTTGATTGTATAAAGcgtccttgtatatatatatatatgtgtgtaactGAACTGTAACTTCATTCATAATCATCTGTCTCAATCAGTCTTAATGAACAAGTGAGCAACACCACAAGCCGCAAAGCGTGAACTCAAGGCCAGAATGTTCCAGTACATGTAGTTCACTTTAGGCCAGAGTACACCGACTGAACAAACACAAACTAACGGGAATGCTTGCTGCTGGCATGTTGTAGAaacctgtagaaaaaaaaagtctctagAAAAGGGATGCCCAAAACCATTGCAGAAAACCTGCATTTACTCAGCAAGAGAAAatatttgtttgcttgttttttttttttgacaacatTTGGAcgattaaatgtttatttgatgGTAGAAGAgctcttttaaaaatattcactGCATCCCAATGGCATACCACCCACTAATACTATATGGTACTTATATGTTacttttatatactatatactaatcCTGATTGTGCATGTTTGACAGGTTAGTACAGTACACAAAATATGAACAtactatatttttaatgaatgaattcatttgtttgtttgcattattcCTATCCACGCTCATGTATCGTGGATACATACTCAAAGTAGGTCGTTTTTGAGTGTGGATATGAtacatgcaaacaaacaaattaattaactaattaaaaatatagtaTACTAACTTATACCTAACTTATACACAACTTACACAACATACTCAAAAACTAGctagtattagtaattagtgCACAATTGGGATGCACCCTCTGTcaatgagagacagaaagtgatgtaggaataatatttttatataaactatttatgCTGAGGGACtagatatatttttgtttttgttttcagaatTTAAAGACAgctttaagttattttatttaaatatactgtgtgcaaaactgtgcccTATTAACCATCCCCTACATGTAAAAATATAGATGACTATCTATATTATagggtttatttcttttattgttgatgctgATGATTACAGCCaacgaaaacccaaaaatcacagtatgagaaaattagaaaataatataaaaccaaTCGAGGATGTCTGAAACAACAGTACCGCAATGCATTATGGTATACAAGGAAAATTTTGATAAGCACTATAACATTGTCCATATAGTGCACTTTTCTATAGGCTAATAGGGATCGATTCTGAACACagcatataaattaaaatatttgggGGCAATTTTTTTTAGGACTTTTTGGTCCTTTGGTCTCCCACTTCAAAAGTTTgtacacccctgatctagaatATGGTATTGGCATATTGGTATTGGCAATACATATTATTGACTGTCCCGGGTTCTCCAGGTAGACGTCTGTTTCCGGTCATTTGCTGGTTGACTGCTGAGTGTAgagcaggggtcagcaattaagtttggccgcgggccactacgtttctgttttgtaaaatggtATGGAAGCGTGATGGTATGGAGTGCTACagagtagctctccagcccagagggttgttgaacccagatGCAGAACAGTCGATCTCaaagcaagaaaaaaggaaaaaataaataaataaacacgccagggtgtcatcagggtcgctgtccaatacactaccgctgccacGGCTAGAGAATTGGGACGTAtccccttataaggagatagtgAGCGCAAGAAAGTgtggaaaaatgagaacgggtggaaactaaagtcacgctgagcgtgacagagagagaaaggggaggaatgtaaacaaaagctcaccagagaagctttttttaatttaatttttttttccattattgttcattatagttcaaactaCCTCACGGCCACttcaaaaagttcaaaaagaaTGTTTGTAAATCTGGACAACTGCAGAAATAAGTGTGCActggtgtgtgagtgaatgagtgagtgtttGTGCAACAGGTAATATTCTCTGGGTTGCTGTTCAATAGACGGTAGCTCACTACCAGTACAGACATACGGACTcaatttgggacacagcccttTTCTTTATAGGCTCTTCTATTCTCGGTCTCCTCTGTTGCTGAAGTTTAGATTCAGTTCGGTAGGAAACCCCCACCCTCCCACCAGTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104817 lncRNA upstream 38929 2809559 ~ 2828232 (+) True G77715
TU104813 lncRNA upstream 123550 2719123 ~ 2743611 (+) True G77712
TU104812 lncRNA upstream 153891 2702199 ~ 2713270 (+) True G77711
TU104625 lncRNA upstream 390158 2451427 ~ 2477003 (+) True G77575
TU104820 lncRNA downstream 48 2869857 ~ 2870831 (+) True G77717
TU104822 lncRNA downstream 10081 2879890 ~ 2883024 (+) True G77719
TU104824 lncRNA downstream 14883 2884692 ~ 2892308 (+) False G77720
TU104823 lncRNA downstream 15952 2885761 ~ 2892308 (+) True G77720
TU104825 lncRNA downstream 25063 2894872 ~ 2895634 (+) True G77721
XM_022672594.1 mRNA upstream 2722 2760670 ~ 2864439 (+) False LOC103030398
XM_022672595.1 mRNA upstream 2722 2787948 ~ 2864439 (+) True LOC103030398
XM_022672489.1 mRNA upstream 392370 2471398 ~ 2474791 (+) True LOC103026149
XM_007257927.3 mRNA upstream 398599 2465310 ~ 2468562 (+) True LOC103026471
XM_007257942.3 mRNA upstream 402909 2458445 ~ 2464252 (+) True LOC103031026
XM_022672596.1 mRNA downstream 38800 2908609 ~ 2957430 (+) True eif2ak4
XM_022672602.1 mRNA downstream 391982 3261791 ~ 3296653 (+) True tecpr2
XM_022672603.1 mRNA downstream 440009 3309818 ~ 3324750 (+) True rcor1
XM_022672604.1 mRNA downstream 462122 3331931 ~ 3359744 (+) True traf3
XM_022672606.1 mRNA downstream 495933 3365742 ~ 3393158 (+) True LOC103028495
TU104477 other upstream 1170180 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 1382111 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 1858319 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 2234789 631714 ~ 632372 (+) True G77154
TU103901 other upstream 2346571 519633 ~ 520590 (+) True G77059
TU104827 other downstream 30325 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 30325 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 546359 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 547030 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 550118 3419927 ~ 3419999 (+) True trnav-cac_1

Expression Profile