RNA id: TU104823


Basic Information

Item Value
RNA id TU104823
length 1939
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id G77720
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2884692 ~ 2892308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgccttatgtGCTGTGTAAATGTGTCCATAGCGCTCAAAAtacttctctttctgtttctttgctCATTATCTGCTATCTGCTcaattcatatgtttttttttaaacctccaATTTAACCACACAAGTGCCCATTAGCAAGAGAAGCTTCAgttaaaagtgaaataaatattcACCACCACTTAATCTTTATCCTCTGCCAGTTTAAAGCTTTCATATTGATCCGAGTACAAGTAATTGTGCTCTGAACAAAATGATCTGTTCTGCTGCCGTCTTAATGCTAAATTGTTAATTGCTACCTTAACATTAGAGCTCTGATGCTTAACAGAGCTCAGCATGGATTGGtcagcctgatttaaacacattagACAATGCAGAACGCTGAAtaggatttataaatggtttcaATTATTTGTGGAAATCATTGTGTGTTCACTTGGTGTGAAATGGTatgaaataaatcattaaaattgcACTGATAAGGGCCTTAAGAAAGCAATTATTCACATTTACTGTGGACATCAGCACAATAAAATCTCCTATTAATATTCCTCCATCAGAACTGGATCATTATCATTGTATTTTTTAGTACTTATTAGTGATTGAGTGTGCAGACAATAGACTAAATAACACATTTCTGTTGTTTCCATACACAAACAATGCTAAGACGTACCtacaatgctaaaaaaaaaaaagaaaatgcactaGTCCATAATCAACAGATAAGCTTAAAAATAACAGACACAAACAGATACACGTCCAAAATATTAAACTGTCTAATATTCCTGTCCTGTGCTGAAGGACTTCCATTAACAAATGAAGGAAAATTACATCCATCAATTACATGAAAGCCATCATGCACAATTgttcacacagagagacaaacaaaCGTGCAAATTTATACAGTACTGAATAAAACAGTGAAGAAGTTGATTAGGGTTGGATTGTGCAGTTTCTCGAGGAAGCAGACTGAGAAGATGGACTTACACAATCTCGACTGGGCTTCCCGAGGCTAAAGCGCAGACGCAAAGACTTTCTGGTCGCCTCTTTTTTTGTCACTCTTGGAGAAAAGCAGCCGGCTTTCCCAGATTCCactCGATTAACATTTCTGTGGCTCAGTCTTTTGCTCCTTCTTCTTGAAGAGCTTGCAGACAGTCGACTGATTCTCCCCACAGAGGATATTCCACTCCGAGAGGAGTCCAGGGTTCCTGAGGCACTGTGCACTGATCCAGGTGTGGAACTTCCTCCAAACAGAGGATTGGGAAACAGCTCCAGACCGAGATTCTTCTTAAGAGACCTCCGCTTCTTGTTGGAGAATCCGTAACTCTGCCCCGACTCCATGGGAAGTTTGCGCTTGGGCGTTATGATAACTGGCGTGTCAGTGGAAAAAACCTCCAAAACTGCGCCTGCATCTTTTCACCCCTGAAGGTGTATTTCCATCCTCCGCAGCATCAGCTGGGGAAAATACTCCAGACTCACATCCCAGCATGGCTGGAACTTTGGCGATGAGGAACTCTGGGACCACACCCAAGTCTTCAGCATTATCAATAAGGCACTGCACCACGGCAGCTTGAAGTTTTAGTTTCTTCTCTGTACTCGTGCTCATCTTCTCTGTCCCATCTCCACAGTGGAGGAGGTTTGGAGCAAAGATAACAGAAAGGTTGCCACTGTCCATCTTGTTTTCCCCACACCTCTGAGAGACTCTGTTCAGAAAGCTGAAAAAGTAGCGCAGAATGTTGACATTGCCATGAGGCAGTACACAGGACAGCAGGATGATGGCCGATGTTCTCTCCTCGGAGGTGGGCAGCTCCTGGGCTTTTAGAAAGGCACTCTGCAGGTCTGTGGGCAGGATTGGCTCAGGCAGCTCCCGGAAAAACTGTTTCAGAAGCCCAGCGATGTCCAGTGGGAGGGCAGTGGACAGACACTCCTCAGCCTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104822 lncRNA upstream 2737 2879890 ~ 2883024 (+) True G77719
TU104820 lncRNA upstream 14930 2869857 ~ 2870831 (+) True G77717
TU104819 lncRNA upstream 15952 2832568 ~ 2869809 (+) False G77716
TU104818 lncRNA upstream 15952 2867161 ~ 2869809 (+) True G77716
TU104817 lncRNA upstream 57529 2809559 ~ 2828232 (+) True G77715
TU104825 lncRNA downstream 2564 2894872 ~ 2895634 (+) True G77721
TU104834 lncRNA downstream 57766 2950074 ~ 2986710 (+) True G77724
TU104838 lncRNA downstream 71742 2964050 ~ 2967101 (+) True G77727
TU104915 lncRNA downstream 304909 3197217 ~ 3206214 (+) True G77792
TU104923 lncRNA downstream 320249 3212557 ~ 3212865 (+) True G77799
XM_022672594.1 mRNA upstream 21322 2760670 ~ 2864439 (+) False LOC103030398
XM_022672595.1 mRNA upstream 21322 2787948 ~ 2864439 (+) True LOC103030398
XM_022672489.1 mRNA upstream 410970 2471398 ~ 2474791 (+) True LOC103026149
XM_007257927.3 mRNA upstream 417199 2465310 ~ 2468562 (+) True LOC103026471
XM_007257942.3 mRNA upstream 421509 2458445 ~ 2464252 (+) True LOC103031026
XM_022672596.1 mRNA downstream 16301 2908609 ~ 2957430 (+) True eif2ak4
XM_022672602.1 mRNA downstream 369483 3261791 ~ 3296653 (+) True tecpr2
XM_022672603.1 mRNA downstream 417510 3309818 ~ 3324750 (+) True rcor1
XM_022672604.1 mRNA downstream 439623 3331931 ~ 3359744 (+) True traf3
XM_022672606.1 mRNA downstream 473434 3365742 ~ 3393158 (+) True LOC103028495
TU104477 other upstream 1188780 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 1400711 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 1876919 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 2253389 631714 ~ 632372 (+) True G77154
TU103901 other upstream 2365171 519633 ~ 520590 (+) True G77059
TU104827 other downstream 7826 2900134 ~ 2978094 (+) True G77722
TU104828 other downstream 7826 2900134 ~ 2978094 (+) False G77722
trnav-aac_2 other downstream 523860 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 524531 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 527619 3419927 ~ 3419999 (+) True trnav-cac_1

Expression Profile