RNA id: TU104834


Basic Information

Item Value
RNA id TU104834
length 288
lncRNA type sense_over
GC content 0.55
exon number 2
gene id G77724
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2950074 ~ 2986710 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caggactacagtactcttacggtgaatttacactgctccgacgcgacaacgcacagcgacggatcccattcattttcaatgggaagcgccgcctccgtcagacgcagtcgcgcggtgcatcatgggtccgacgcgtcgagagcgggggatgcgatgcgatgaaaagttgagccgagctgaactttatgcaaatgagtccgtccaacgcaatgcgtctatccaatcagagagcaggtgttggcctgtaacgcgtcctcagcgcagcgcatgaaaacattttagttccgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104825 lncRNA upstream 54440 2894872 ~ 2895634 (+) True G77721
TU104824 lncRNA upstream 57766 2884692 ~ 2892308 (+) False G77720
TU104823 lncRNA upstream 57766 2885761 ~ 2892308 (+) True G77720
TU104822 lncRNA upstream 67050 2879890 ~ 2883024 (+) True G77719
TU104820 lncRNA upstream 79243 2869857 ~ 2870831 (+) True G77717
TU104915 lncRNA downstream 210507 3197217 ~ 3206214 (+) True G77792
TU104923 lncRNA downstream 225847 3212557 ~ 3212865 (+) True G77799
TU104933 lncRNA downstream 233911 3220621 ~ 3297442 (+) True G77808
TU104928 lncRNA downstream 273756 3260466 ~ 3300671 (+) True G77804
TU104946 lncRNA downstream 335375 3322085 ~ 3359733 (+) False traf3
XM_022672594.1 mRNA upstream 85635 2760670 ~ 2864439 (+) False LOC103030398
XM_022672595.1 mRNA upstream 85635 2787948 ~ 2864439 (+) True LOC103030398
XM_022672489.1 mRNA upstream 475283 2471398 ~ 2474791 (+) True LOC103026149
XM_007257927.3 mRNA upstream 481512 2465310 ~ 2468562 (+) True LOC103026471
XM_007257942.3 mRNA upstream 485822 2458445 ~ 2464252 (+) True LOC103031026
XM_022672602.1 mRNA downstream 275081 3261791 ~ 3296653 (+) True tecpr2
XM_022672603.1 mRNA downstream 323108 3309818 ~ 3324750 (+) True rcor1
XM_022672604.1 mRNA downstream 345221 3331931 ~ 3359744 (+) True traf3
XM_022672606.1 mRNA downstream 379032 3365742 ~ 3393158 (+) True LOC103028495
XM_022672605.1 mRNA downstream 379032 3365742 ~ 3392659 (+) False LOC103028495
TU104477 other upstream 1253093 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 1465024 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 1941232 1005129 ~ 1008842 (+) True G77212
TU104033 other upstream 2317702 631714 ~ 632372 (+) True G77154
TU103901 other upstream 2429484 519633 ~ 520590 (+) True G77059
trnav-aac_2 other downstream 429458 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 430129 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 433217 3419927 ~ 3419999 (+) True trnav-cac_1
TU105324 other downstream 1302797 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 2465405 5452115 ~ 5527965 (+) False LOC103025550

Expression Profile