RNA id: TU104933


Basic Information

Item Value
RNA id TU104933
length 367
lncRNA type sense_over
GC content 0.58
exon number 2
gene id G77808
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3220621 ~ 3297442 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gggggggtgctggagcctatcccagccggcatcgggcggaaggcaggatacaccctggacaggccgccaatccatcgcagggcagacagacacagacagacacacagacacattcactcacacactcacacctaaggggcaatttcaaccaagctccaattagcctgaacgtgccgtctttggactgtgggaggaaaccggagaacccggaggaaacccacgcagacacggggagaacgtgcaaactccacacagaaagacccgggacgccccagccgggaatcgaacccaggccgtcttgctgtgaggcggaagtgctacccactgcgccactgtGCCGCCCTAGacatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104923 lncRNA upstream 7756 3212557 ~ 3212865 (+) True G77799
TU104915 lncRNA upstream 14407 3197217 ~ 3206214 (+) True G77792
TU104834 lncRNA upstream 233911 2950074 ~ 2986710 (+) True G77724
TU104838 lncRNA upstream 253520 2964050 ~ 2967101 (+) True G77727
TU104825 lncRNA upstream 324987 2894872 ~ 2895634 (+) True G77721
TU104946 lncRNA downstream 24643 3322085 ~ 3359733 (+) False traf3
TU104955 lncRNA downstream 96938 3394380 ~ 3394876 (+) True G77817
TU104988 lncRNA downstream 244810 3542252 ~ 3549615 (+) True G77847
TU105124 lncRNA downstream 468338 3765780 ~ 3824274 (+) False g2e3
TU105125 lncRNA downstream 500576 3798018 ~ 3824872 (+) False g2e3
XM_022672596.1 mRNA upstream 263191 2908609 ~ 2957430 (+) True eif2ak4
XM_022672594.1 mRNA upstream 356182 2760670 ~ 2864439 (+) False LOC103030398
XM_022672595.1 mRNA upstream 356182 2787948 ~ 2864439 (+) True LOC103030398
XM_022672489.1 mRNA upstream 745830 2471398 ~ 2474791 (+) True LOC103026149
XM_007257927.3 mRNA upstream 752059 2465310 ~ 2468562 (+) True LOC103026471
XM_022672603.1 mRNA downstream 12376 3309818 ~ 3324750 (+) True rcor1
XM_022672604.1 mRNA downstream 34489 3331931 ~ 3359744 (+) True traf3
XM_022672606.1 mRNA downstream 68300 3365742 ~ 3393158 (+) True LOC103028495
XM_022672605.1 mRNA downstream 68300 3365742 ~ 3392659 (+) False LOC103028495
XM_022672460.1 mRNA downstream 99017 3396459 ~ 3475761 (+) True LOC103028182
TU104827 other upstream 242527 2900134 ~ 2978094 (+) True G77722
TU104828 other upstream 242527 2900134 ~ 2978094 (+) False G77722
TU104477 other upstream 1523640 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 1735571 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 2211779 1005129 ~ 1008842 (+) True G77212
trnav-aac_2 other downstream 118726 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 119397 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 122485 3419927 ~ 3419999 (+) True trnav-cac_1
TU105324 other downstream 992065 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 2154673 5452115 ~ 5527965 (+) False LOC103025550

Expression Profile