RNA id: TU104946


Basic Information

Item Value
RNA id TU104946
length 301
lncRNA type read_through
GC content 0.30
exon number 2
gene id traf3
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3322085 ~ 3359744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaataaaaaaaaattctgCATGTAAAACCTACAATACTTACATGAGCTAACCTCCCAACTGTGTTTACTATATTGACACATTATTTTTGGTAATGTTAAACATTGATGATGCTGTGCATCGGGatatattgttctttttttaacaccATTTTGAAATACTAGCTTTCGAGTCTGCATCCATGCAGAGACACACATTTACAAATAATCAGATCACTTTCTAAAGAGCGagtgacagttttgcacaagttgttttttttttaatgtataatgcAAATGtataagaaataaatatgaaacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104928 lncRNA upstream 21414 3260466 ~ 3300671 (+) True G77804
TU104933 lncRNA upstream 24643 3220621 ~ 3297442 (+) True G77808
TU104923 lncRNA upstream 109220 3212557 ~ 3212865 (+) True G77799
TU104915 lncRNA upstream 115871 3197217 ~ 3206214 (+) True G77792
TU104834 lncRNA upstream 335375 2950074 ~ 2986710 (+) True G77724
TU104955 lncRNA downstream 34647 3394380 ~ 3394876 (+) True G77817
TU104988 lncRNA downstream 182519 3542252 ~ 3549615 (+) True G77847
TU105124 lncRNA downstream 406047 3765780 ~ 3824274 (+) False g2e3
TU105125 lncRNA downstream 438285 3798018 ~ 3824872 (+) False g2e3
TU105133 lncRNA downstream 557071 3916804 ~ 3918653 (+) False G77961
XM_022672602.1 mRNA upstream 25432 3261791 ~ 3296653 (+) True tecpr2
XM_022672596.1 mRNA upstream 364655 2908609 ~ 2957430 (+) True eif2ak4
XM_022672594.1 mRNA upstream 457646 2760670 ~ 2864439 (+) False LOC103030398
XM_022672595.1 mRNA upstream 457646 2787948 ~ 2864439 (+) True LOC103030398
XM_022672489.1 mRNA upstream 847294 2471398 ~ 2474791 (+) True LOC103026149
XM_022672606.1 mRNA downstream 6009 3365742 ~ 3393158 (+) True LOC103028495
XM_022672605.1 mRNA downstream 6009 3365742 ~ 3392659 (+) False LOC103028495
XM_022672460.1 mRNA downstream 36726 3396459 ~ 3475761 (+) True LOC103028182
XM_007257917.3 mRNA downstream 122405 3482138 ~ 3484662 (+) True foxg1
XM_022672461.1 mRNA downstream 454150 3813883 ~ 3824815 (+) True g2e3
TU104827 other upstream 343991 2900134 ~ 2978094 (+) True G77722
TU104828 other upstream 343991 2900134 ~ 2978094 (+) False G77722
TU104477 other upstream 1625104 1693356 ~ 1696981 (+) True G77471
TU104376 other upstream 1837035 1484670 ~ 1485050 (+) True G77410
TU104123 other upstream 2313243 1005129 ~ 1008842 (+) True G77212
trnav-aac_2 other downstream 56435 3416168 ~ 3416240 (+) True trnav-aac_2
trnav-aac_3 other downstream 57106 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-cac_1 other downstream 60194 3419927 ~ 3419999 (+) True trnav-cac_1
TU105324 other downstream 929774 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 2092382 5452115 ~ 5527965 (+) False LOC103025550

Expression Profile