RNA id: TU104988


Basic Information

Item Value
RNA id TU104988
length 249
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G77847
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3542252 ~ 3549615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacccatgttttttgtgcaagtaaagattataaaaactataaacattatgatcaactgaatatggctcaaaaacttgatgatcgaaaattgtctggctttcaaataaaaaatgtgcaattaaaatatatattgtttatcagtacagtgatacagaatactgaatgtaccctttggctgcaggttaaatggtacaaatttgtacttattgctgttagaaattactttgtacttcagagggaacaaatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104955 lncRNA upstream 147376 3394380 ~ 3394876 (+) True G77817
TU104946 lncRNA upstream 182519 3322085 ~ 3359733 (+) False traf3
TU104928 lncRNA upstream 241581 3260466 ~ 3300671 (+) True G77804
TU104933 lncRNA upstream 244810 3220621 ~ 3297442 (+) True G77808
TU104923 lncRNA upstream 329387 3212557 ~ 3212865 (+) True G77799
TU105124 lncRNA downstream 216165 3765780 ~ 3824274 (+) False g2e3
TU105125 lncRNA downstream 248403 3798018 ~ 3824872 (+) False g2e3
TU105133 lncRNA downstream 367189 3916804 ~ 3918653 (+) False G77961
TU105134 lncRNA downstream 367189 3916804 ~ 3921829 (+) True G77961
TU105259 lncRNA downstream 463135 4012750 ~ 4013009 (+) True G78053
XM_007257917.3 mRNA upstream 57590 3482138 ~ 3484662 (+) True foxg1
XM_022672460.1 mRNA upstream 66491 3396459 ~ 3475761 (+) True LOC103028182
XM_022672606.1 mRNA upstream 149094 3365742 ~ 3393158 (+) True LOC103028495
XM_022672605.1 mRNA upstream 149593 3365742 ~ 3392659 (+) False LOC103028495
XM_022672604.1 mRNA upstream 182508 3331931 ~ 3359744 (+) True traf3
XM_022672461.1 mRNA downstream 264268 3813883 ~ 3824815 (+) True g2e3
XM_022672610.1 mRNA downstream 276013 3825628 ~ 3853124 (+) True scfd1
XM_022672611.1 mRNA downstream 303991 3853606 ~ 3858455 (+) True LOC103022404
XM_007257912.3 mRNA downstream 318938 3868553 ~ 3879318 (+) True coch
XM_007257903.3 mRNA downstream 358283 3907898 ~ 3915777 (+) True ap4s1
trnav-cac_1 other upstream 122253 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 125341 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 126012 3416168 ~ 3416240 (+) True trnav-aac_2
TU104827 other upstream 564158 2900134 ~ 2978094 (+) True G77722
TU104828 other upstream 564158 2900134 ~ 2978094 (+) False G77722
TU105324 other downstream 739892 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 1902500 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 3307794 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 4045092 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 4106714 7656329 ~ 7670774 (+) False fam167b

Expression Profile