RNA id: TU105263


Basic Information

Item Value
RNA id TU105263
length 262
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G78057
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4036314 ~ 4036575 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttcaaaaaaggtgtggttattgtaaaagagctggttatgggcgggaccaataacagaccgtcagctccgctccgccccgctctgcagcctgtgacctcgaggcagccctcagggacggggttatttaaatgagtaggctgtctctccacagtctttctccctcctctggtctctactgcgcagaatcaggtggcaggatcgccaacatggcggaagattttggcttcattttcattgaatgaatgggaacggagacacggcc

Function

GO: NA

KEGG:

id description
ko00590 Arachidonic acid metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105261 lncRNA upstream 3752 4032263 ~ 4032562 (+) True G78055
TU105259 lncRNA upstream 23305 4012750 ~ 4013009 (+) True G78053
TU105134 lncRNA upstream 114485 3916804 ~ 3921829 (+) True G77961
TU105133 lncRNA upstream 117661 3916804 ~ 3918653 (+) False G77961
TU105125 lncRNA upstream 211442 3798018 ~ 3824872 (+) False g2e3
TU105265 lncRNA downstream 8862 4045437 ~ 4104453 (+) False G78059
TU105266 lncRNA downstream 8862 4045437 ~ 4104875 (+) True G78059
TU105267 lncRNA downstream 44820 4081395 ~ 4114376 (+) True G78060
TU105276 lncRNA downstream 118168 4154743 ~ 4157865 (+) True G78068
TU105273 lncRNA downstream 121942 4158517 ~ 4159317 (+) True G78066
XM_007257898.3 mRNA upstream 25056 4007515 ~ 4011258 (+) True LOC103044683
XM_007257903.3 mRNA upstream 120537 3907898 ~ 3915777 (+) True ap4s1
XM_007257912.3 mRNA upstream 156996 3868553 ~ 3879318 (+) True coch
XM_022672611.1 mRNA upstream 177859 3853606 ~ 3858455 (+) True LOC103022404
XM_022672610.1 mRNA upstream 183190 3825628 ~ 3853124 (+) True scfd1
XM_007258890.3 mRNA downstream 262221 4298796 ~ 4308409 (+) True klhdc1
XM_007258891.3 mRNA downstream 273742 4310317 ~ 4313788 (+) True dnaaf2
XM_007258893.3 mRNA downstream 285979 4322554 ~ 4329505 (+) True klhdc2
XM_007258894.2 mRNA downstream 318181 4354756 ~ 4364804 (+) True mok
XM_007258895.3 mRNA downstream 318992 4355567 ~ 4364804 (+) False mok
trnav-cac_1 other upstream 616315 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 619403 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 620074 3416168 ~ 3416240 (+) True trnav-aac_2
TU104827 other upstream 1058220 2900134 ~ 2978094 (+) True G77722
TU105324 other downstream 252932 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 1415540 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 2820834 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 3558132 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 3619754 7656329 ~ 7670774 (+) False fam167b

Expression Profile