RNA id: TU105341


Basic Information

Item Value
RNA id TU105341
length 359
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G78122
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4351453 ~ 4353277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCATGGCAAAACCGGAGGGCATGAGATTTTTGGGCCATTCAAACTCTGTGGAGTGAATTCGTATTCCAGACTCAATCAGTAATACTGCTTTACTGTCCGgcTTCTGGAGTCGTATGAGATAGGTCTTGTTGTCAATGTCATAGACATTGTACACTCGCATCCCGACATAGTTGGCGTTAATTTCAGAGATCACTGCTCTGATATCCACTGTGTTAAACCTGCTTTTCATCCTgtcagaaagaaaaaacacaggttACACTTCTTCTCATCTGCTCTTCTCCGGAGACTCAACACCACACAGCACAAGACTGCCACTGCGCATGCGTGTCATACCCTACGGAagcctgtttgtttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105335 lncRNA upstream 31126 4318054 ~ 4320327 (+) True G78117
XR_002650303.1 lncRNA upstream 65222 4278111 ~ 4286231 (+) True LOC111193172
TU105273 lncRNA upstream 192136 4158517 ~ 4159317 (+) True G78066
TU105276 lncRNA upstream 193588 4154743 ~ 4157865 (+) True G78068
TU105267 lncRNA upstream 237077 4081395 ~ 4114376 (+) True G78060
TU105402 lncRNA downstream 124589 4477866 ~ 4490654 (+) True G78172
TU105536 lncRNA downstream 851805 5205082 ~ 5207413 (+) True G78283
TU105535 lncRNA downstream 939478 5292755 ~ 5294206 (+) True G78282
TU105673 lncRNA downstream 2203956 6557233 ~ 6563936 (+) False G78397
TU105674 lncRNA downstream 2204221 6557498 ~ 6563936 (+) True G78397
XM_007258893.3 mRNA upstream 21948 4322554 ~ 4329505 (+) True klhdc2
XM_007258891.3 mRNA upstream 37665 4310317 ~ 4313788 (+) True dnaaf2
XM_007258890.3 mRNA upstream 43044 4298796 ~ 4308409 (+) True klhdc1
XM_007257898.3 mRNA upstream 340195 4007515 ~ 4011258 (+) True LOC103044683
XM_007257903.3 mRNA upstream 435676 3907898 ~ 3915777 (+) True ap4s1
XM_007258894.2 mRNA downstream 1479 4354756 ~ 4364804 (+) True mok
XM_007258895.3 mRNA downstream 2290 4355567 ~ 4364804 (+) False mok
XM_007258903.3 mRNA downstream 27030 4380307 ~ 4387505 (+) True LOC103042329
XM_007258897.3 mRNA downstream 113087 4466364 ~ 4486907 (+) True LOC103040906
XM_007258899.3 mRNA downstream 113096 4466373 ~ 4486907 (+) False LOC103040906
TU105324 other upstream 53269 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 931454 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 934542 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 935213 3416168 ~ 3416240 (+) True trnav-aac_2
TU104828 other upstream 1373359 2900134 ~ 2978094 (+) False G77722
TU105595 other downstream 1098838 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 2504132 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 3241430 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 3303052 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 3303052 7656329 ~ 7729001 (+) False fam167b

Expression Profile